Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_025396.1 Length=15442 Score E Sequences producing significant alignments: (Bits) Value seq1440 138 1e-28 seq8251 136 4e-28 seq1814 136 4e-28 seq9517 132 5e-27 seq2296 113 4e-21 >seq1440 Length=90230 Score = 138 bits (152), Expect = 1e-28 Identities = 272/402 (68%), Gaps = 3/402 (1%) Strand=Plus/Plus Query 10578 TTGGTGATAGGTTTAAAAGCCAAGGAAAGAGAGCTTAAAGAAGAAGGTAGGTTTTTCTCT 10637 || ||||| ||| | | ||| || ||| ||||| ||| | |||| || ||||| || Sbjct 51980 TTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTGCT 52036 Query 10638 TTAATGAGTTATGAGTTAAGAGACTACTTTGTTGCAACTGAATACTTGATTAAGAAATAT 10697 | ||||||| | | || |||||||| ||| || || ||||||||||| || Sbjct 52037 CTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCAT 52096 Query 10698 TATGTACCATTGTTTGAAGGACTTACAATGGCAGATGATTTGAACACTGTAATTAAAAAG 10757 | ||| || | | | |||| | |||||||| || || | |||||| ||| | || ||| Sbjct 52097 TTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAG 52156 Query 10758 ATGCTGGACGTGTCATCCGGTCAAGGAACAAGAAACTATGATTATGTATCCATAGCCAAC 10817 ||| || | | ||||| || || || | |||||| | || ||||||| || Sbjct 52157 ATGATGCAAGCTTCATCTGGACAGACCACTCACAGTTATGATGAGGTGACCATAGCAAAT 52216 Query 10818 AACATTGATTATGAGAAATGGAATAATTATCAAAGGAAAGAATCAAATGGACCGGTATTC 10877 | ||||||||||||| ||||| ||||||||||| || ||||| ||||| ||| Sbjct 52217 CATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTC 52276 Query 10878 AGAGTAATGGGACAATTCCTTGGAATGGAAAATCTTATAGTTCGGACACATGAATTCTTT 10937 ||| ||||| | ||| ||||| | ||| | | | ||||||||||||||| Sbjct 52277 TCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTT 52336 Query 10938 GAAAATAGTTTGGTCTATTATAACCAGCGAGCAGACTTAATG 10979 || || ||||||| || | ||| |||| |||||| Sbjct 52337 CGGGATTCATTCTTCTATTACAAAGATCGACCAGATTTAATG 52378 >seq8251 Length=2688 Score = 136 bits (150), Expect = 4e-28 Identities = 276/406 (68%), Gaps = 9/406 (2%) Strand=Plus/Plus Query 10576 AGTTGGTGATAGGTTTAAAAGCCAAGGAAAGAGAGCTTAAAGAAGAAGGTAGGTTTTTCT 10635 |||| ||||| ||| | | ||| || ||| ||||| ||| | |||| || ||||| Sbjct 234 AGTTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTG 290 Query 10636 CTTTAATGAGTTATGAGTTAAGAGACTACTTTGTTGCAACTGAATACTTGATTAAGAAAT 10695 || | ||||||| | | || |||||||| ||| || || ||||||||||| Sbjct 291 CTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGC 350 Query 10696 ATTATGTACCATTGTTTGAAGGACTTACAATGGCAGATGATTTGAACACTGTAATTAAAA 10755 ||| ||| || | | | |||| | |||||||| || || | |||||| ||| | || | Sbjct 351 ATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAACACCGTAGTCAACA 410 Query 10756 AGATGCTGGACGTGTCATCCGGTCAAGGAACA---AGAAACTATGATTATGTATCCATAG 10812 ||||| || | | ||||| || || || || || | |||||| | | |||||| Sbjct 411 AGATGATGCAAGCTTCATCTGGACA--GACCACTCAG-AGTTATGATGAGGCGACCATAG 467 Query 10813 CCAACAACATTGATTATGAGAAATGGAATAATTATCAAAGGAAAGAATCAAATGGACCGG 10872 | || | ||||||||||||| ||||| ||||||||||| || ||||| |||| Sbjct 468 CAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGG 527 Query 10873 TATTCAGAGTAATGGGACAATTCCTTGGAATGGAAAATCTTATAGTTCGGACACATGAAT 10932 | ||| ||| ||||| | ||| ||||| | ||| | | | |||||||||| Sbjct 528 TCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAAT 587 Query 10933 TCTTTGAAAATAGTTTGGTCTATTATAACCAGCGAGCAGACTTAAT 10978 ||||| || || ||||||| || | ||| |||| ||||| Sbjct 588 TCTTTCGGGATTCATTCTTCTATTACAAAGATCGACCAGATTTAAT 633 >seq1814 Length=63972 Score = 136 bits (150), Expect = 4e-28 Identities = 276/406 (68%), Gaps = 9/406 (2%) Strand=Plus/Plus Query 10576 AGTTGGTGATAGGTTTAAAAGCCAAGGAAAGAGAGCTTAAAGAAGAAGGTAGGTTTTTCT 10635 |||| ||||| ||| | | ||| || ||| ||||| ||| | |||| || ||||| Sbjct 1640 AGTTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTG 1696 Query 10636 CTTTAATGAGTTATGAGTTAAGAGACTACTTTGTTGCAACTGAATACTTGATTAAGAAAT 10695 || | ||||||| | | || |||||||| ||| || || ||||||||||| Sbjct 1697 CTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGC 1756 Query 10696 ATTATGTACCATTGTTTGAAGGACTTACAATGGCAGATGATTTGAACACTGTAATTAAAA 10755 ||| ||| || | | | |||| | |||||||| || || | |||||| ||| | || | Sbjct 1757 ATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAACACCGTAGTCAACA 1816 Query 10756 AGATGCTGGACGTGTCATCCGGTCAAGGAACA---AGAAACTATGATTATGTATCCATAG 10812 ||||| || | | ||||| || || || || || | |||||| | | |||||| Sbjct 1817 AGATGATGCAAGCTTCATCTGGACA--GACCACTCAG-AGTTATGATGAGGCGACCATAG 1873 Query 10813 CCAACAACATTGATTATGAGAAATGGAATAATTATCAAAGGAAAGAATCAAATGGACCGG 10872 | || | ||||||||||||| ||||| ||||||||||| || ||||| |||| Sbjct 1874 CAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGG 1933 Query 10873 TATTCAGAGTAATGGGACAATTCCTTGGAATGGAAAATCTTATAGTTCGGACACATGAAT 10932 | ||| ||| ||||| | ||| ||||| | ||| | | | |||||||||| Sbjct 1934 TCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAAT 1993 Query 10933 TCTTTGAAAATAGTTTGGTCTATTATAACCAGCGAGCAGACTTAAT 10978 ||||| || || ||||||| || | ||| |||| ||||| Sbjct 1994 TCTTTCGGGATTCATTCTTCTATTACAAAGATCGACCAGATTTAAT 2039 >seq9517 Length=2557 Score = 132 bits (146), Expect = 5e-27 Identities = 275/406 (68%), Gaps = 9/406 (2%) Strand=Plus/Plus Query 10576 AGTTGGTGATAGGTTTAAAAGCCAAGGAAAGAGAGCTTAAAGAAGAAGGTAGGTTTTTCT 10635 |||| ||||| ||| | | ||| || ||| ||||| ||| | |||| || ||||| Sbjct 559 AGTTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTG 615 Query 10636 CTTTAATGAGTTATGAGTTAAGAGACTACTTTGTTGCAACTGAATACTTGATTAAGAAAT 10695 || | ||||||| | | || |||||||| ||| || || ||||||||||| Sbjct 616 CTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGC 675 Query 10696 ATTATGTACCATTGTTTGAAGGACTTACAATGGCAGATGATTTGAACACTGTAATTAAAA 10755 ||| ||| || | | | |||| | |||||||| || || | ||||| ||| | || | Sbjct 676 ATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTACAACACCGTAGTCAACA 735 Query 10756 AGATGCTGGACGTGTCATCCGGTCAAGGAACA---AGAAACTATGATTATGTATCCATAG 10812 ||||| || | | ||||| || || || || ||| |||||| | | |||||| Sbjct 736 AGATGATGCAAGCTTCATCTGGACA--GACCACTCAGAGT-TATGATGAGGCGACCATAG 792 Query 10813 CCAACAACATTGATTATGAGAAATGGAATAATTATCAAAGGAAAGAATCAAATGGACCGG 10872 | || | ||||||||||||| ||||| ||||||||||| || ||||| |||| Sbjct 793 CAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGG 852 Query 10873 TATTCAGAGTAATGGGACAATTCCTTGGAATGGAAAATCTTATAGTTCGGACACATGAAT 10932 | ||| ||| ||||| | ||| ||||| | ||| | | | |||||||||| Sbjct 853 TCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAAT 912 Query 10933 TCTTTGAAAATAGTTTGGTCTATTATAACCAGCGAGCAGACTTAAT 10978 ||||| || || ||||||| || | ||| |||| ||||| Sbjct 913 TCTTTCGGGATTCATTCTTCTATTACAAAGATCGACCAGATTTAAT 958 >seq2296 Length=40579 Score = 113 bits (124), Expect = 4e-21 Identities = 195/280 (70%), Gaps = 9/280 (3%) Strand=Plus/Plus Query 10576 AGTTGGTGATAGGTTTAAAAGCCAAGGAAAGAGAGCTTAAAGAAGAAGGTAGGTTTTTCT 10635 |||| ||||| ||| | | ||| || ||| ||||| ||| | |||| || ||||| Sbjct 1703 AGTTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTG 1759 Query 10636 CTTTAATGAGTTATGAGTTAAGAGACTACTTTGTTGCAACTGAATACTTGATTAAGAAAT 10695 || | ||||||| | | || |||||||| ||| || || ||||||||||| Sbjct 1760 CTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGC 1819 Query 10696 ATTATGTACCATTGTTTGAAGGACTTACAATGGCAGATGATTTGAACACTGTAATTAAAA 10755 ||| ||| || | | | |||| | |||||||| || || | ||||| ||| | || | Sbjct 1820 ATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTACAACACCGTAGTCAACA 1879 Query 10756 AGATGCTGGACGTGTCATCCGGTCAAGGAACA---AGAAACTATGATTATGTATCCATAG 10812 ||||| || | | ||||| || || || || || | |||||| | | |||||| Sbjct 1880 AGATGATGCAAGCTTCATCTGGACA--GACCACTCAG-AGTTATGATGAGGCGACCATAG 1936 Query 10813 CCAACAACATTGATTATGAGAAATGGAATAATTATCAAAG 10852 | || | ||||||||||||| ||||| ||||||||||| Sbjct 1937 CAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAG 1976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 49267164458850