Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_028236.1 Length=11072 Score E Sequences producing significant alignments: (Bits) Value seq8251 109 4e-20 seq1814 109 4e-20 seq1440 109 4e-20 seq9517 107 1e-19 >seq8251 Length=2688 Score = 109 bits (120), Expect = 4e-20 Identities = 223/326 (68%), Gaps = 4/326 (1%) Strand=Plus/Plus Query 6257 AAAGTAAAAGGAAGATTCTTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTG 6316 ||| ||||||||||||| ||| | || ||| |||| || | || || || || | Sbjct 269 AAACTAAAAGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATA 328 Query 6317 ACGGAGTACTTGATAAAGGAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGAT 6376 |||||||| ||||| ||| |||||| |||||| | | || || | ||||||||||| Sbjct 329 ACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGAC 388 Query 6377 GACATGACAACAGTTATATCCAAGCTGATGGATAGAACGCAGGGGCA-AGGAGGGAGTGA 6435 ||| || || || | |||| ||||| | | || || | | || | Sbjct 389 GACTAGAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAG- 447 Query 6436 TTATTCTCAAATCTGTATTGCAAATCATATAGATTATGAGAAGTGGAACAATCACCAAAG 6495 |||| | | || ||||||||| | ||||||||||||||||||||| | ||||| Sbjct 448 TTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAG 507 Query 6496 AAAGGATGCCACTGGTCCAGTTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTT 6555 | || | | || ||| || ||| ||||||||||| ||||| || | || ||||| Sbjct 508 AGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTT 567 Query 6556 AATATAC-CGGACACATGAATTCTTT 6580 | ||| | ||||||||||||||| Sbjct 568 -GTTTACGAGAACACATGAATTCTTT 592 >seq1814 Length=63972 Score = 109 bits (120), Expect = 4e-20 Identities = 223/326 (68%), Gaps = 4/326 (1%) Strand=Plus/Plus Query 6257 AAAGTAAAAGGAAGATTCTTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTG 6316 ||| ||||||||||||| ||| | || ||| |||| || | || || || || | Sbjct 1675 AAACTAAAAGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATA 1734 Query 6317 ACGGAGTACTTGATAAAGGAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGAT 6376 |||||||| ||||| ||| |||||| |||||| | | || || | ||||||||||| Sbjct 1735 ACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGAC 1794 Query 6377 GACATGACAACAGTTATATCCAAGCTGATGGATAGAACGCAGGGGCA-AGGAGGGAGTGA 6435 ||| || || || | |||| ||||| | | || || | | || | Sbjct 1795 GACTAGAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAG- 1853 Query 6436 TTATTCTCAAATCTGTATTGCAAATCATATAGATTATGAGAAGTGGAACAATCACCAAAG 6495 |||| | | || ||||||||| | ||||||||||||||||||||| | ||||| Sbjct 1854 TTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAG 1913 Query 6496 AAAGGATGCCACTGGTCCAGTTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTT 6555 | || | | || ||| || ||| ||||||||||| ||||| || | || ||||| Sbjct 1914 AGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTT 1973 Query 6556 AATATAC-CGGACACATGAATTCTTT 6580 | ||| | ||||||||||||||| Sbjct 1974 -GTTTACGAGAACACATGAATTCTTT 1998 >seq1440 Length=90230 Score = 109 bits (120), Expect = 4e-20 Identities = 223/326 (68%), Gaps = 4/326 (1%) Strand=Plus/Plus Query 6257 AAAGTAAAAGGAAGATTCTTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTG 6316 ||| ||||||||||||| ||| | || ||| |||| || | || || || || | Sbjct 52013 AAACTAAAAGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATA 52072 Query 6317 ACGGAGTACTTGATAAAGGAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGAT 6376 |||||||| ||||| ||| |||||| |||||| | | || || | ||||||||||| Sbjct 52073 ACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGAC 52132 Query 6377 GACATGACAACAGTTATATCCAAGCTGATGGATAGAACGCAGGGGCA-AGGAGGGAGTGA 6435 ||| || || || | |||| ||||| | | || || | | | | Sbjct 52133 GACTAGAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCACAG- 52191 Query 6436 TTATTCTCAAATCTGTATTGCAAATCATATAGATTATGAGAAGTGGAACAATCACCAAAG 6495 |||| | | | || ||||||||| | ||||||||||||||||||||| | ||||| Sbjct 52192 TTATGATGAGGTGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAG 52251 Query 6496 AAAGGATGCCACTGGTCCAGTTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTT 6555 | || | | || ||| || ||| ||||||||||| ||||| || | || ||||| Sbjct 52252 AGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTT 52311 Query 6556 AATATAC-CGGACACATGAATTCTTT 6580 | ||| | ||||||||||||||| Sbjct 52312 -GTTTACGAGAACACATGAATTCTTT 52336 >seq9517 Length=2557 Score = 107 bits (118), Expect = 1e-19 Identities = 225/328 (69%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 6257 AAAGTAAAAGGAAGATTCTTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTG 6316 ||| ||||||||||||| ||| | || ||| |||| || | || || || || | Sbjct 594 AAACTAAAAGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATA 653 Query 6317 ACGGAGTACTTGATAAAGGAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGAT 6376 |||||||| ||||| ||| |||||| |||||| | | || || | ||||||||||| Sbjct 654 ACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGAC 713 Query 6377 GACATGACAACA--GTTATATCCAAGCTGATGGATAGAACGCAGGGGCA-AGGAGGGAGT 6433 ||| |||||| || | |||| ||||| | | || || | | || Sbjct 714 GACT--ACAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGA 771 Query 6434 GATTATTCTCAAATCTGTATTGCAAATCATATAGATTATGAGAAGTGGAACAATCACCAA 6493 | |||| | | || ||||||||| | ||||||||||||||||||||| | ||| Sbjct 772 G-TTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAA 830 Query 6494 AGAAAGGATGCCACTGGTCCAGTTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAAT 6553 ||| || | | || ||| || ||| ||||||||||| ||||| || | || ||| Sbjct 831 AGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAAT 890 Query 6554 TTAATATAC-CGGACACATGAATTCTTT 6580 || | ||| | ||||||||||||||| Sbjct 891 TT-GTTTACGAGAACACATGAATTCTTT 917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35295100795360