Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_028239.1 Length=16133 Score E Sequences producing significant alignments: (Bits) Value seq9517 116 4e-22 seq8251 113 5e-21 seq1814 113 5e-21 seq1440 113 5e-21 seq2296 95.1 1e-15 >seq9517 Length=2557 Score = 116 bits (128), Expect = 4e-22 Identities = 217/316 (69%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 11327 GGGAGGtttttttCATTAATGAGCTGGGAGCTGAGGGAGTACTTCGTATTTACTGAATAC 11386 || || |||||| | | ||||| ||| || | || ||||| || | || || || Sbjct 603 GGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTAT 662 Query 11387 CTAATTAAAGAGCATTTTGTACCATTATTTAAGGGTCTGACTATGGCTGATGACTTACAA 11446 | ||||| |||||||||| || | | || || | || |||||||| |||| |||| Sbjct 663 TTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACT-ACAA 721 Query 11447 -ACAGTTATTAAGAAGATGATAGATGTGTCTTCTGGTCAAGGCACTGAGACATATGAGAA 11505 || || | || |||||||| | | || ||||| || |||| ||| ||||| | Sbjct 722 CACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAGTTATGATGA 781 Query 11506 TATCACCATTGCAAATAACATAGATTATGAGAAATGGAATAATTATCAAAGGTATGAATC 11565 ||||| |||||| | | ||||||||||| ||||| ||||||||||| ||| Sbjct 782 GGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGG 841 Query 11566 TAATCATGCAATATTCACAGTGATGGGGCAATTTTTAGGGTATCCAAAGTTAATTGCAAG 11625 ||| || | | ||| |||| ||||| | |||||| || | || || || || | || Sbjct 842 AAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAG 901 Query 11626 AACTCATGAGtttttt 11641 ||| ||||| || ||| Sbjct 902 AACACATGAATTCTTT 917 >seq8251 Length=2688 Score = 113 bits (124), Expect = 5e-21 Identities = 214/315 (68%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 11327 GGGAGGtttttttCATTAATGAGCTGGGAGCTGAGGGAGTACTTCGTATTTACTGAATAC 11386 || || |||||| | | ||||| ||| || | || ||||| || | || || || Sbjct 278 GGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTAT 337 Query 11387 CTAATTAAAGAGCATTTTGTACCATTATTTAAGGGTCTGACTATGGCTGATGACTTACAA 11446 | ||||| |||||||||| || | | || || | || |||||||| |||| | Sbjct 338 TTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAAC 397 Query 11447 ACAGTTATTAAGAAGATGATAGATGTGTCTTCTGGTCAAGGCACTGAGACATATGAGAAT 11506 || || | || |||||||| | | || ||||| || |||| ||| ||||| | Sbjct 398 ACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAGTTATGATGAG 457 Query 11507 ATCACCATTGCAAATAACATAGATTATGAGAAATGGAATAATTATCAAAGGTATGAATCT 11566 ||||| |||||| | | ||||||||||| ||||| ||||||||||| ||| Sbjct 458 GCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGA 517 Query 11567 AATCATGCAATATTCACAGTGATGGGGCAATTTTTAGGGTATCCAAAGTTAATTGCAAGA 11626 ||| || | | ||| |||| ||||| | |||||| || | || || || || | ||| Sbjct 518 AATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGA 577 Query 11627 ACTCATGAGtttttt 11641 || ||||| || ||| Sbjct 578 ACACATGAATTCTTT 592 >seq1814 Length=63972 Score = 113 bits (124), Expect = 5e-21 Identities = 214/315 (68%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 11327 GGGAGGtttttttCATTAATGAGCTGGGAGCTGAGGGAGTACTTCGTATTTACTGAATAC 11386 || || |||||| | | ||||| ||| || | || ||||| || | || || || Sbjct 1684 GGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTAT 1743 Query 11387 CTAATTAAAGAGCATTTTGTACCATTATTTAAGGGTCTGACTATGGCTGATGACTTACAA 11446 | ||||| |||||||||| || | | || || | || |||||||| |||| | Sbjct 1744 TTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAAC 1803 Query 11447 ACAGTTATTAAGAAGATGATAGATGTGTCTTCTGGTCAAGGCACTGAGACATATGAGAAT 11506 || || | || |||||||| | | || ||||| || |||| ||| ||||| | Sbjct 1804 ACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAGTTATGATGAG 1863 Query 11507 ATCACCATTGCAAATAACATAGATTATGAGAAATGGAATAATTATCAAAGGTATGAATCT 11566 ||||| |||||| | | ||||||||||| ||||| ||||||||||| ||| Sbjct 1864 GCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGA 1923 Query 11567 AATCATGCAATATTCACAGTGATGGGGCAATTTTTAGGGTATCCAAAGTTAATTGCAAGA 11626 ||| || | | ||| |||| ||||| | |||||| || | || || || || | ||| Sbjct 1924 AATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGA 1983 Query 11627 ACTCATGAGtttttt 11641 || ||||| || ||| Sbjct 1984 ACACATGAATTCTTT 1998 >seq1440 Length=90230 Score = 113 bits (124), Expect = 5e-21 Identities = 214/315 (68%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 11327 GGGAGGtttttttCATTAATGAGCTGGGAGCTGAGGGAGTACTTCGTATTTACTGAATAC 11386 || || |||||| | | ||||| ||| || | || ||||| || | || || || Sbjct 52022 GGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTAT 52081 Query 11387 CTAATTAAAGAGCATTTTGTACCATTATTTAAGGGTCTGACTATGGCTGATGACTTACAA 11446 | ||||| |||||||||| || | | || || | || |||||||| |||| | Sbjct 52082 TTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAAC 52141 Query 11447 ACAGTTATTAAGAAGATGATAGATGTGTCTTCTGGTCAAGGCACTGAGACATATGAGAAT 11506 || || | || |||||||| | | || ||||| || |||| | | ||||| | Sbjct 52142 ACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCACAGTTATGATGAG 52201 Query 11507 ATCACCATTGCAAATAACATAGATTATGAGAAATGGAATAATTATCAAAGGTATGAATCT 11566 | ||||| |||||| | | ||||||||||| ||||| ||||||||||| ||| Sbjct 52202 GTGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGA 52261 Query 11567 AATCATGCAATATTCACAGTGATGGGGCAATTTTTAGGGTATCCAAAGTTAATTGCAAGA 11626 ||| || | | ||| |||| ||||| | |||||| || | || || || || | ||| Sbjct 52262 AATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGA 52321 Query 11627 ACTCATGAGtttttt 11641 || ||||| || ||| Sbjct 52322 ACACATGAATTCTTT 52336 >seq2296 Length=40579 Score = 95.1 bits (104), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 11327 GGGAGGtttttttCATTAATGAGCTGGGAGCTGAGGGAGTACTTCGTATTTACTGAATAC 11386 || || |||||| | | ||||| ||| || | || ||||| || | || || || Sbjct 1747 GGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTAT 1806 Query 11387 CTAATTAAAGAGCATTTTGTACCATTATTTAAGGGTCTGACTATGGCTGATGACTTACAA 11446 | ||||| |||||||||| || | | || || | || |||||||| |||| |||| Sbjct 1807 TTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACT-ACAA 1865 Query 11447 -ACAGTTATTAAGAAGATGATAGATGTGTCTTCTGGTCAAGGCACTGAGACATATGAGAA 11505 || || | || |||||||| | | || ||||| || |||| ||| ||||| | Sbjct 1866 CACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGACAGACCACTCAGAGTTATGATGA 1925 Query 11506 TATCACCATTGCAAATAACATAGATTATGAGAAATGGAATAATTATCAAAG 11556 ||||| |||||| | | ||||||||||| ||||| ||||||||||| Sbjct 1926 GGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAG 1976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51477071024320