Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_028246.1 Length=14627 Score E Sequences producing significant alignments: (Bits) Value seq1440 131 2e-26 seq9517 120 3e-23 seq8251 120 3e-23 seq1814 120 3e-23 seq2296 91.5 1e-14 >seq1440 Length=90230 Score = 131 bits (144), Expect = 2e-26 Identities = 226/324 (70%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 9834 GATTACTTCGTAATGACTGAATATTTGATaaaaaaaTATTATGTACCATTATTCAAAGGA 9893 |||||||| || || || || |||||||| || || ||| ||| || | | | |||| Sbjct 52058 GATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGA 52117 Query 9894 TTGACCATGGCTGATGATCAAAATACAGTAGTAAAGAAAATGCTCAAAGTTTCTAAAGGT 9953 || || |||||||| || | || || ||||| || || ||| | ||| ||| || Sbjct 52118 TTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGA 52177 Query 9954 CA-AGGGCTAACAGATTATAAAGAGATAACATTTGCTAATCACTTGGATTATGAGAAGTG 10012 || | || |||| |||| | ||| | || | || ||||| | |||||||||||||| Sbjct 52178 CAGACCACTCACAG-TTATGATGAGGTGACCATAGCAAATCATGTTGATTATGAGAAGTG 52236 Query 10013 GAATAATTATCAAAGGAGGGAATCAAACGGTCCGGTGTTCAGAGTAATGGGCCAGTTTTT 10072 ||| ||||||||||| | || ||| | |||||| ||| ||| ||||| | ||||| Sbjct 52237 GAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTT 52296 Query 10073 AGGTCTACCTCACTTAATAGAAAGAACTCACGAGTTCTTT--GAAAATAGTCTAATTTAT 10130 || ||||| | || | ||||| || || |||||| | | | ||| | ||| Sbjct 52297 TGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTTCGGGATTCATTCT--TCTAT 52354 Query 10131 TACAATGGCCGACCTGATTTAATG 10154 ||||| | ||||| ||||||||| Sbjct 52355 TACAAAGATCGACCAGATTTAATG 52378 >seq9517 Length=2557 Score = 120 bits (132), Expect = 3e-23 Identities = 223/323 (69%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 9834 GATTACTTCGTAATGACTGAATATTTGATaaaaaaaTATTATGTACCATTATTCAAAGGA 9893 |||||||| || || || || |||||||| || || ||| ||| || | | | |||| Sbjct 639 GATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGA 698 Query 9894 TTGACCATGGCTGATGATCAAAATACAGTAGTAAAGAAAATGCTCAAAGTTTCTAAAGGT 9953 || || |||||||| || | || || ||||| || || ||| | ||| ||| || Sbjct 699 TTAACAATGGCTGACGACTACAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGA 758 Query 9954 CAAGGGCTAACAGA-TTATAAAGAGATAACATTTGCTAATCACTTGGATTATGAGAAGTG 10012 || | | |||| |||| | ||| || | || ||||| | |||||||||||||| Sbjct 759 CA-GACCACTCAGAGTTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTG 817 Query 10013 GAATAATTATCAAAGGAGGGAATCAAACGGTCCGGTGTTCAGAGTAATGGGCCAGTTTTT 10072 ||| ||||||||||| | || ||| | |||||| ||| ||| ||||| | ||||| Sbjct 818 GAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTT 877 Query 10073 AGGTCTACCTCACTTAATAGAAAGAACTCACGAGTTCTTT--GAAAATAGTCTAATTTAT 10130 || ||||| | || | ||||| || || |||||| | | | ||| | ||| Sbjct 878 TGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTTCGGGATTCATTCT--TCTAT 935 Query 10131 TACAATGGCCGACCTGATTTAAT 10153 ||||| | ||||| |||||||| Sbjct 936 TACAAAGATCGACCAGATTTAAT 958 >seq8251 Length=2688 Score = 120 bits (132), Expect = 3e-23 Identities = 223/323 (69%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 9834 GATTACTTCGTAATGACTGAATATTTGATaaaaaaaTATTATGTACCATTATTCAAAGGA 9893 |||||||| || || || || |||||||| || || ||| ||| || | | | |||| Sbjct 314 GATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGA 373 Query 9894 TTGACCATGGCTGATGATCAAAATACAGTAGTAAAGAAAATGCTCAAAGTTTCTAAAGGT 9953 || || |||||||| || | || || ||||| || || ||| | ||| ||| || Sbjct 374 TTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGA 433 Query 9954 CAAGGGCTAACAGA-TTATAAAGAGATAACATTTGCTAATCACTTGGATTATGAGAAGTG 10012 || | | |||| |||| | ||| || | || ||||| | |||||||||||||| Sbjct 434 CA-GACCACTCAGAGTTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTG 492 Query 10013 GAATAATTATCAAAGGAGGGAATCAAACGGTCCGGTGTTCAGAGTAATGGGCCAGTTTTT 10072 ||| ||||||||||| | || ||| | |||||| ||| ||| ||||| | ||||| Sbjct 493 GAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTT 552 Query 10073 AGGTCTACCTCACTTAATAGAAAGAACTCACGAGTTCTTT--GAAAATAGTCTAATTTAT 10130 || ||||| | || | ||||| || || |||||| | | | ||| | ||| Sbjct 553 TGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTTCGGGATTCATTCT--TCTAT 610 Query 10131 TACAATGGCCGACCTGATTTAAT 10153 ||||| | ||||| |||||||| Sbjct 611 TACAAAGATCGACCAGATTTAAT 633 >seq1814 Length=63972 Score = 120 bits (132), Expect = 3e-23 Identities = 223/323 (69%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 9834 GATTACTTCGTAATGACTGAATATTTGATaaaaaaaTATTATGTACCATTATTCAAAGGA 9893 |||||||| || || || || |||||||| || || ||| ||| || | | | |||| Sbjct 1720 GATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGA 1779 Query 9894 TTGACCATGGCTGATGATCAAAATACAGTAGTAAAGAAAATGCTCAAAGTTTCTAAAGGT 9953 || || |||||||| || | || || ||||| || || ||| | ||| ||| || Sbjct 1780 TTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGA 1839 Query 9954 CAAGGGCTAACAGA-TTATAAAGAGATAACATTTGCTAATCACTTGGATTATGAGAAGTG 10012 || | | |||| |||| | ||| || | || ||||| | |||||||||||||| Sbjct 1840 CA-GACCACTCAGAGTTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTG 1898 Query 10013 GAATAATTATCAAAGGAGGGAATCAAACGGTCCGGTGTTCAGAGTAATGGGCCAGTTTTT 10072 ||| ||||||||||| | || ||| | |||||| ||| ||| ||||| | ||||| Sbjct 1899 GAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTT 1958 Query 10073 AGGTCTACCTCACTTAATAGAAAGAACTCACGAGTTCTTT--GAAAATAGTCTAATTTAT 10130 || ||||| | || | ||||| || || |||||| | | | ||| | ||| Sbjct 1959 TGGATTACCTAATTTGTTTACGAGAACACATGAATTCTTTCGGGATTCATTCT--TCTAT 2016 Query 10131 TACAATGGCCGACCTGATTTAAT 10153 ||||| | ||||| |||||||| Sbjct 2017 TACAAAGATCGACCAGATTTAAT 2039 >seq2296 Length=40579 Score = 91.5 bits (100), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 9834 GATTACTTCGTAATGACTGAATATTTGATaaaaaaaTATTATGTACCATTATTCAAAGGA 9893 |||||||| || || || || |||||||| || || ||| ||| || | | | |||| Sbjct 1783 GATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGA 1842 Query 9894 TTGACCATGGCTGATGATCAAAATACAGTAGTAAAGAAAATGCTCAAAGTTTCTAAAGGT 9953 || || |||||||| || | || || ||||| || || ||| | ||| ||| || Sbjct 1843 TTAACAATGGCTGACGACTACAACACCGTAGTCAACAAGATGATGCAAGCTTCATCTGGA 1902 Query 9954 CAAGGGCTAACAGA-TTATAAAGAGATAACATTTGCTAATCACTTGGATTATGAGAAGTG 10012 || | | |||| |||| | ||| || | || ||||| | |||||||||||||| Sbjct 1903 CA-GACCACTCAGAGTTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTG 1961 Query 10013 GAATAATTATCAAAG----GAGGG-AATCAAACGGTCCG 10046 ||| ||||||||||| ||||| ||||| ||| ||| Sbjct 1962 GAACAATTATCAAAGAGGTGAGGGAAATCATCCGGCCCG 2000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46660690000300