Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_031240.1 Length=11541 Score E Sequences producing significant alignments: (Bits) Value seq1440 150 1e-32 seq9517 145 6e-31 seq8251 145 6e-31 seq1814 145 6e-31 seq2296 114 1e-21 >seq1440 Length=90230 Score = 150 bits (166), Expect = 1e-32 Identities = 268/386 (69%), Gaps = 9/386 (2%) Strand=Plus/Plus Query 6440 TTAGTGATTGGTTTAAAAGAGAAAGAAAGAGAGTTGAAGATAGGAGGAAGATTTTTCGCT 6499 |||||||| ||| | | || |||||| ||| |||| || |||||||||||| ||| Sbjct 51980 TTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTGCT 52036 Query 6500 TTAATGTCTTGGGAGATTAGAGATTATTTTGTAATGACAGAATATTTAATTAAAACTCAT 6559 | ||| |||| || | ||||| ||||| || || || ||||| ||||| | ||| Sbjct 52037 CTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCAT 52096 Query 6560 TTTGTGCCTCTCTTTGACGGATTAACAATGGCTGATGATCTA-ACAACTGTTATCGGAAA 6618 ||||| ||||||| | ||||||||||||||||| || ||| | || || || || Sbjct 52097 TTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGA-CTAGAACACCGTAGTCAACAA 52155 Query 6619 GATTTTGCGAAACACTGAAGGACAAGGAGAA--GATGGATATGAAAGTGTCACCTTCGCA 6676 ||| ||| | | ||||| || | | | ||||| || ||| | ||| Sbjct 52156 GATGATGCAAGCTTCATCTGGACA--GACCACTCACAGTTATGATGAGGTGACCATAGCA 52213 Query 6677 GATCATATAGATTACGAAAAATGGAACAATCATCAGAGAGGAGAGGCAAATAATCCAACT 6736 ||||| | ||||| || || ||||||||| |||| ||||| |||| |||| |||| Sbjct 52214 AATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTC 52273 Query 6737 TTCAAAGTTATGGGACAATTTTTAGGATACCCCAATTTAATTCAGAGAACTCATGAAATA 6796 ||| ||| ||||| | |||||| |||| || ||||| || |||||| |||||| | Sbjct 52274 TTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAATTC 52333 Query 6797 TTTGAGAAATCATGGATATATTATAA 6822 ||| | | |||| | ||||| || Sbjct 52334 TTTCGGGATTCATTCTTCTATTACAA 52359 >seq9517 Length=2557 Score = 145 bits (160), Expect = 6e-31 Identities = 267/386 (69%), Gaps = 9/386 (2%) Strand=Plus/Plus Query 6440 TTAGTGATTGGTTTAAAAGAGAAAGAAAGAGAGTTGAAGATAGGAGGAAGATTTTTCGCT 6499 |||||||| ||| | | || |||||| ||| |||| || |||||||||||| ||| Sbjct 561 TTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTGCT 617 Query 6500 TTAATGTCTTGGGAGATTAGAGATTATTTTGTAATGACAGAATATTTAATTAAAACTCAT 6559 | ||| |||| || | ||||| ||||| || || || ||||| ||||| | ||| Sbjct 618 CTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCAT 677 Query 6560 TTTGTGCCTCTCTTTGACGGATTAACAATGGCTGATGATCTA-ACAACTGTTATCGGAAA 6618 ||||| ||||||| | ||||||||||||||||| || ||| | || || || || Sbjct 678 TTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGA-CTACAACACCGTAGTCAACAA 736 Query 6619 GATTTTGCGAAACACTGAAGGACAAGGAGAA--GATGGATATGAAAGTGTCACCTTCGCA 6676 ||| ||| | | ||||| || | | | ||||| | ||| | ||| Sbjct 737 GATGATGCAAGCTTCATCTGGACA--GACCACTCAGAGTTATGATGAGGCGACCATAGCA 794 Query 6677 GATCATATAGATTACGAAAAATGGAACAATCATCAGAGAGGAGAGGCAAATAATCCAACT 6736 ||||| | ||||| || || ||||||||| |||| ||||| |||| |||| |||| Sbjct 795 AATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTC 854 Query 6737 TTCAAAGTTATGGGACAATTTTTAGGATACCCCAATTTAATTCAGAGAACTCATGAAATA 6796 ||| ||| ||||| | |||||| |||| || ||||| || |||||| |||||| | Sbjct 855 TTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAATTC 914 Query 6797 TTTGAGAAATCATGGATATATTATAA 6822 ||| | | |||| | ||||| || Sbjct 915 TTTCGGGATTCATTCTTCTATTACAA 940 >seq8251 Length=2688 Score = 145 bits (160), Expect = 6e-31 Identities = 267/386 (69%), Gaps = 9/386 (2%) Strand=Plus/Plus Query 6440 TTAGTGATTGGTTTAAAAGAGAAAGAAAGAGAGTTGAAGATAGGAGGAAGATTTTTCGCT 6499 |||||||| ||| | | || |||||| ||| |||| || |||||||||||| ||| Sbjct 236 TTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTGCT 292 Query 6500 TTAATGTCTTGGGAGATTAGAGATTATTTTGTAATGACAGAATATTTAATTAAAACTCAT 6559 | ||| |||| || | ||||| ||||| || || || ||||| ||||| | ||| Sbjct 293 CTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCAT 352 Query 6560 TTTGTGCCTCTCTTTGACGGATTAACAATGGCTGATGATCTA-ACAACTGTTATCGGAAA 6618 ||||| ||||||| | ||||||||||||||||| || ||| | || || || || Sbjct 353 TTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGA-CTAGAACACCGTAGTCAACAA 411 Query 6619 GATTTTGCGAAACACTGAAGGACAAGGAGAA--GATGGATATGAAAGTGTCACCTTCGCA 6676 ||| ||| | | ||||| || | | | ||||| | ||| | ||| Sbjct 412 GATGATGCAAGCTTCATCTGGACA--GACCACTCAGAGTTATGATGAGGCGACCATAGCA 469 Query 6677 GATCATATAGATTACGAAAAATGGAACAATCATCAGAGAGGAGAGGCAAATAATCCAACT 6736 ||||| | ||||| || || ||||||||| |||| ||||| |||| |||| |||| Sbjct 470 AATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTC 529 Query 6737 TTCAAAGTTATGGGACAATTTTTAGGATACCCCAATTTAATTCAGAGAACTCATGAAATA 6796 ||| ||| ||||| | |||||| |||| || ||||| || |||||| |||||| | Sbjct 530 TTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAATTC 589 Query 6797 TTTGAGAAATCATGGATATATTATAA 6822 ||| | | |||| | ||||| || Sbjct 590 TTTCGGGATTCATTCTTCTATTACAA 615 >seq1814 Length=63972 Score = 145 bits (160), Expect = 6e-31 Identities = 267/386 (69%), Gaps = 9/386 (2%) Strand=Plus/Plus Query 6440 TTAGTGATTGGTTTAAAAGAGAAAGAAAGAGAGTTGAAGATAGGAGGAAGATTTTTCGCT 6499 |||||||| ||| | | || |||||| ||| |||| || |||||||||||| ||| Sbjct 1642 TTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTGCT 1698 Query 6500 TTAATGTCTTGGGAGATTAGAGATTATTTTGTAATGACAGAATATTTAATTAAAACTCAT 6559 | ||| |||| || | ||||| ||||| || || || ||||| ||||| | ||| Sbjct 1699 CTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCAT 1758 Query 6560 TTTGTGCCTCTCTTTGACGGATTAACAATGGCTGATGATCTA-ACAACTGTTATCGGAAA 6618 ||||| ||||||| | ||||||||||||||||| || ||| | || || || || Sbjct 1759 TTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGA-CTAGAACACCGTAGTCAACAA 1817 Query 6619 GATTTTGCGAAACACTGAAGGACAAGGAGAA--GATGGATATGAAAGTGTCACCTTCGCA 6676 ||| ||| | | ||||| || | | | ||||| | ||| | ||| Sbjct 1818 GATGATGCAAGCTTCATCTGGACA--GACCACTCAGAGTTATGATGAGGCGACCATAGCA 1875 Query 6677 GATCATATAGATTACGAAAAATGGAACAATCATCAGAGAGGAGAGGCAAATAATCCAACT 6736 ||||| | ||||| || || ||||||||| |||| ||||| |||| |||| |||| Sbjct 1876 AATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATCCGGTC 1935 Query 6737 TTCAAAGTTATGGGACAATTTTTAGGATACCCCAATTTAATTCAGAGAACTCATGAAATA 6796 ||| ||| ||||| | |||||| |||| || ||||| || |||||| |||||| | Sbjct 1936 TTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATGAATTC 1995 Query 6797 TTTGAGAAATCATGGATATATTATAA 6822 ||| | | |||| | ||||| || Sbjct 1996 TTTCGGGATTCATTCTTCTATTACAA 2021 >seq2296 Length=40579 Score = 114 bits (126), Expect = 1e-21 Identities = 206/296 (70%), Gaps = 9/296 (3%) Strand=Plus/Plus Query 6440 TTAGTGATTGGTTTAAAAGAGAAAGAAAGAGAGTTGAAGATAGGAGGAAGATTTTTCGCT 6499 |||||||| ||| | | || |||||| ||| |||| || |||||||||||| ||| Sbjct 1705 TTAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTGCT 1761 Query 6500 TTAATGTCTTGGGAGATTAGAGATTATTTTGTAATGACAGAATATTTAATTAAAACTCAT 6559 | ||| |||| || | ||||| ||||| || || || ||||| ||||| | ||| Sbjct 1762 CTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCAT 1821 Query 6560 TTTGTGCCTCTCTTTGACGGATTAACAATGGCTGATGATCTA-ACAACTGTTATCGGAAA 6618 ||||| ||||||| | ||||||||||||||||| || ||| | || || || || Sbjct 1822 TTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGA-CTACAACACCGTAGTCAACAA 1880 Query 6619 GATTTTGCGAAACACTGAAGGACAAGGAGAA--GATGGATATGAAAGTGTCACCTTCGCA 6676 ||| ||| | | ||||| || | | | ||||| | ||| | ||| Sbjct 1881 GATGATGCAAGCTTCATCTGGACA--GACCACTCAGAGTTATGATGAGGCGACCATAGCA 1938 Query 6677 GATCATATAGATTACGAAAAATGGAACAATCATCAGAGAGGAGAGGCAAATAATCC 6732 ||||| | ||||| || || ||||||||| |||| ||||| |||| |||| |||| Sbjct 1939 AATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATCATCC 1994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36795046633800