Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_031301.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq1440 100 2e-17 seq8251 96.9 2e-16 seq1814 96.9 2e-16 seq9517 95.1 9e-16 >seq1440 Length=90230 Score = 100 bits (110), Expect = 2e-17 Identities = 250/373 (67%), Gaps = 24/373 (6%) Strand=Plus/Plus Query 6313 AAAAGGTCGTTTCTTTTCTCTAATGTCATGGATGTTGCGAGAATATTTTGTGATAACAGA 6372 |||||| | || ||| |||| ||| ||| | || || || ||||| ||||| || Sbjct 52018 AAAAGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGA 52077 Query 6373 ATATTTAATCAAGGAGAATTACGTTCCTCTGTTTAGTGGATTGACAATGGCTGATGATTT 6432 ||||| || ||| || ||| |||||||| | || ||||| ||||||||||| || | Sbjct 52078 GTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTA 52137 Query 6433 GACAACTGTCATATCAAAATTGTTAGATAGGAGTCAGGGACAAGGTGGTAAAGA----TT 6488 || || || | ||| | |||| || || | | ||| | ||| | Sbjct 52138 GAACACCGTAGT--CAACA-----AGAT--GATGCAAGCTTCATCTGG-ACAGACCACTC 52187 Query 6489 ACACTAATATTT--GT----ATCGCAAATCATATTGACTATGAGAAATGGAACAACCATC 6542 ||| | || | || || ||||||||| |||| |||||||| |||||||| ||| Sbjct 52188 ACAGTTATGATGAGGTGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATC 52247 Query 6543 AAAGAAAAGCTGCAACTGATCCAGTTTTCAAGGTCATGGGAGAGTTCTTAGGATATCCCA 6602 ||||| | | || |||||| || ||| |||||||| || || |||| || | Sbjct 52248 AAAGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTA 52307 Query 6603 ACTTATTCACAAGAACTCACGAATTCTTTCAAGAA--AGTCTAATTTACTACAATGGACG 6660 | || || || ||||| || |||||||||| || | ||| | || ||||| | || Sbjct 52308 ATTTGTTTACGAGAACACATGAATTCTTTCGGGATTCATTCT--TCTATTACAAAGATCG 52365 Query 6661 ACCAGATTTGATG 6673 ||||||||| ||| Sbjct 52366 ACCAGATTTAATG 52378 >seq8251 Length=2688 Score = 96.9 bits (106), Expect = 2e-16 Identities = 248/374 (66%), Gaps = 28/374 (7%) Strand=Plus/Plus Query 6313 AAAAGGTCGTTTCTTTTCTCTAATGTCATGGATGTTGCGAGAATATTTTGTGATAACAGA 6372 |||||| | || ||| |||| ||| ||| | || || || ||||| ||||| || Sbjct 274 AAAAGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGA 333 Query 6373 ATATTTAATCAAGGAGAATTACGTTCCTCTGTTTAGTGGATTGACAATGGCTGATGATTT 6432 ||||| || ||| || ||| |||||||| | || ||||| ||||||||||| || | Sbjct 334 GTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTA 393 Query 6433 GACAACTGTCATATCAAAATTGTTAGATAGGAGTCAGGGACAAGGTGGTAAAGATTACAC 6492 || || || | ||| | |||| || || | | ||| | ||| ||| Sbjct 394 GAACACCGTAGT--CAACA-----AGAT--GATGCAAGCTTCATCTGG-ACAGAC--CAC 441 Query 6493 TAATATTTGT------------ATCGCAAATCATATTGACTATGAGAAATGGAACAACCA 6540 | | | || | || ||||||||| |||| |||||||| |||||||| | Sbjct 442 TCAGAGTTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTA 501 Query 6541 TCAAAGAAAAGCTGCAACTGATCCAGTTTTCAAGGTCATGGGAGAGTTCTTAGGATATCC 6600 ||||||| | | || |||||| || ||| |||||||| || || |||| || Sbjct 502 TCAAAGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACC 561 Query 6601 CAACTTATTCACAAGAACTCACGAATTCTTTCAAGAA--AGTCTAATTTACTACAATGGA 6658 || || || || ||||| || |||||||||| || | ||| | || ||||| | Sbjct 562 TAATTTGTTTACGAGAACACATGAATTCTTTCGGGATTCATTCT--TCTATTACAAAGAT 619 Query 6659 CGACCAGATTTGAT 6672 ||||||||||| || Sbjct 620 CGACCAGATTTAAT 633 >seq1814 Length=63972 Score = 96.9 bits (106), Expect = 2e-16 Identities = 248/374 (66%), Gaps = 28/374 (7%) Strand=Plus/Plus Query 6313 AAAAGGTCGTTTCTTTTCTCTAATGTCATGGATGTTGCGAGAATATTTTGTGATAACAGA 6372 |||||| | || ||| |||| ||| ||| | || || || ||||| ||||| || Sbjct 1680 AAAAGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGA 1739 Query 6373 ATATTTAATCAAGGAGAATTACGTTCCTCTGTTTAGTGGATTGACAATGGCTGATGATTT 6432 ||||| || ||| || ||| |||||||| | || ||||| ||||||||||| || | Sbjct 1740 GTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTA 1799 Query 6433 GACAACTGTCATATCAAAATTGTTAGATAGGAGTCAGGGACAAGGTGGTAAAGATTACAC 6492 || || || | ||| | |||| || || | | ||| | ||| ||| Sbjct 1800 GAACACCGTAGT--CAACA-----AGAT--GATGCAAGCTTCATCTGG-ACAGAC--CAC 1847 Query 6493 TAATATTTGT------------ATCGCAAATCATATTGACTATGAGAAATGGAACAACCA 6540 | | | || | || ||||||||| |||| |||||||| |||||||| | Sbjct 1848 TCAGAGTTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTA 1907 Query 6541 TCAAAGAAAAGCTGCAACTGATCCAGTTTTCAAGGTCATGGGAGAGTTCTTAGGATATCC 6600 ||||||| | | || |||||| || ||| |||||||| || || |||| || Sbjct 1908 TCAAAGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACC 1967 Query 6601 CAACTTATTCACAAGAACTCACGAATTCTTTCAAGAA--AGTCTAATTTACTACAATGGA 6658 || || || || ||||| || |||||||||| || | ||| | || ||||| | Sbjct 1968 TAATTTGTTTACGAGAACACATGAATTCTTTCGGGATTCATTCT--TCTATTACAAAGAT 2025 Query 6659 CGACCAGATTTGAT 6672 ||||||||||| || Sbjct 2026 CGACCAGATTTAAT 2039 >seq9517 Length=2557 Score = 95.1 bits (104), Expect = 9e-16 Identities = 250/375 (67%), Gaps = 30/375 (8%) Strand=Plus/Plus Query 6313 AAAAGGTCGTTTCTTTTCTCTAATGTCATGGATGTTGCGAGAATATTTTGTGATAACAGA 6372 |||||| | || ||| |||| ||| ||| | || || || ||||| ||||| || Sbjct 599 AAAAGGAAGATTTTTTGCTCTCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGA 658 Query 6373 ATATTTAATCAAGGAGAATTACGTTCCTCTGTTTAGTGGATTGACAATGGCTGATGATTT 6432 ||||| || ||| || ||| |||||||| | || ||||| ||||||||||| || | Sbjct 659 GTATTTGATTAAGAAGCATTTTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACT- 717 Query 6433 GACAACTGTCATA-TCAAAATTGTTAGATAGGAGTCAGGGACAAGGTGGTAAAGATTACA 6491 ||||| | || |||| | |||| || || | | ||| | ||| || Sbjct 718 -ACAACAC-CGTAGTCAACA-----AGAT--GATGCAAGCTTCATCTGG-ACAGAC--CA 765 Query 6492 CTAATATTTGT------------ATCGCAAATCATATTGACTATGAGAAATGGAACAACC 6539 || | | || | || ||||||||| |||| |||||||| |||||||| Sbjct 766 CTCAGAGTTATGATGAGGCGACCATAGCAAATCATGTTGATTATGAGAAGTGGAACAATT 825 Query 6540 ATCAAAGAAAAGCTGCAACTGATCCAGTTTTCAAGGTCATGGGAGAGTTCTTAGGATATC 6599 |||||||| | | || |||||| || ||| |||||||| || || |||| | Sbjct 826 ATCAAAGAGGTGAGGGAAATGATCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTAC 885 Query 6600 CCAACTTATTCACAAGAACTCACGAATTCTTTCAAGAA--AGTCTAATTTACTACAATGG 6657 | || || || || ||||| || |||||||||| || | ||| | || ||||| | Sbjct 886 CTAATTTGTTTACGAGAACACATGAATTCTTTCGGGATTCATTCT--TCTATTACAAAGA 943 Query 6658 ACGACCAGATTTGAT 6672 ||||||||||| || Sbjct 944 TCGACCAGATTTAAT 958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35394244336920