Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_031691.1 Length=11238 Score E Sequences producing significant alignments: (Bits) Value seq1440 138 8e-29 seq9517 129 4e-26 seq8251 129 4e-26 seq1814 129 4e-26 seq2296 104 2e-18 >seq1440 Length=90230 Score = 138 bits (152), Expect = 8e-29 Identities = 283/416 (68%), Gaps = 16/416 (4%) Strand=Plus/Minus Query 4420 TCCATCGATAATCTCCATCAGATCTGGTCTTTGATTGTAATAAATCAGACTCTGTTC--A 4477 ||| || |||| |||| | |||||||| | |||||||| | ||| | | | | Sbjct 52390 TCCTTCTATAA---CCATTAAATCTGGTCGATCTTTGTAATAGA--AGAATGAATCCCGA 52336 Query 4478 AAGAATTCATGGGTTCTAGATATTAAGTTGGGGTATCCCAAAAATTGTCCCATTACCTTG 4537 ||||||||||| ||||| | | || || || |||| |||||| | ||||| || | Sbjct 52335 AAGAATTCATGTGTTCTCGTAAACAAATTAGGTAATCCAAAAAATCGACCCATGACTGAG 52276 Query 4538 AATGTGGGATTATTGGCTGCTCCCCTCTGATGATTGTTCCATTTTTCATAATCTACATGG 4597 || |||| ||| | | || || |||| ||||||||| || |||||||| ||||| Sbjct 52275 AAGACCGGATCATTTCCCTCACCTCTTTGATAATTGTTCCACTTCTCATAATCAACATGA 52216 Query 4598 TTGGCAAAGCTTACATGATCATAATTATCCGTACCTTGACCATATGTGTTGTCCATTAAT 4657 || || | | | || | ||||||| | | || || ||| ||| | ||| | Sbjct 52215 TTTGCTATGGTCACCTCATCATAACTGTGAGTGGTCTGTCCAGATGAAGCTTGCATCATC 52156 Query 4658 TTTTTAGTCAAAACGGTGG---AGTTATCTGCCATGGTTAGACCTTTAAATAATGGGACA 4714 || || | |||||| ||| || ||||| |||| ||| || | | || ||| Sbjct 52155 TTGTTG---ACTACGGTGTTCTAGTCGTCAGCCATTGTTAATCCTGTACAGAGAGGAACA 52099 Query 4715 AAATGCTTCTTGATCAGATATTCTGTTATTACGAAGTATTCTCTCAACTCCCAGGACATG 4774 ||||||||||| |||| ||| || ||||| || ||||| || | | ||| |||| Sbjct 52098 AAATGCTTCTTAATCAAATACTCCGTTATGACAAAGTAATCACGAAGAGACCAACTCATG 52039 Query 4775 AGCGCAAAAAATCTTCCTTTTATTTTCAGTTCACGCTCTTTGCCTTTAAGTCCGAT 4830 || ||||||||||||||||||| |||||| || ||||| || | || ||||| Sbjct 52038 AGAGCAAAAAATCTTCCTTTTAGTTTCAGCTC---TTCTTTTGCTCTCAGACCGAT 51986 >seq9517 Length=2557 Score = 129 bits (142), Expect = 4e-26 Identities = 244/357 (68%), Gaps = 9/357 (3%) Strand=Plus/Minus Query 4477 AAAGAATTCATGGGTTCTAGATATTAAGTTGGGGTATCCCAAAAATTGTCCCATTACCTT 4536 |||||||||||| ||||| | | || || || |||| |||||| | ||||| || Sbjct 917 AAAGAATTCATGTGTTCTCGTAAACAAATTAGGTAATCCAAAAAATCGACCCATGACTGA 858 Query 4537 GAATGTGGGATTATTGGCTGCTCCCCTCTGATGATTGTTCCATTTTTCATAATCTACATG 4596 ||| |||| ||| | | || || |||| ||||||||| || |||||||| ||||| Sbjct 857 GAAGACCGGATCATTTCCCTCACCTCTTTGATAATTGTTCCACTTCTCATAATCAACATG 798 Query 4597 GTTGGCAAAGCTTACATGATCATAATTATCCGTACCTTGACCATATGTGTTGTCCATTAA 4656 || || | | | | | ||||||| | | || || ||| ||| | ||| | Sbjct 797 ATTTGCTATGGTCGCCTCATCATAACTCTGAGTGGTCTGTCCAGATGAAGCTTGCATCAT 738 Query 4657 TTTTTTAGTCAAAACGGTGG---AGTTATCTGCCATGGTTAGACCTTTAAATAATGGGAC 4713 || || | |||||| ||| || ||||| |||| ||| || | | || || Sbjct 737 CTTGTTG---ACTACGGTGTTGTAGTCGTCAGCCATTGTTAATCCTGTACAGAGAGGAAC 681 Query 4714 AAAATGCTTCTTGATCAGATATTCTGTTATTACGAAGTATTCTCTCAACTCCCAGGACAT 4773 |||||||||||| |||| ||| || ||||| || ||||| || | | ||| ||| Sbjct 680 AAAATGCTTCTTAATCAAATACTCCGTTATGACAAAGTAATCACGAAGAGACCAACTCAT 621 Query 4774 GAGCGCAAAAAATCTTCCTTTTATTTTCAGTTCACGCTCTTTGCCTTTAAGTCCGAT 4830 ||| ||||||||||||||||||| |||||| || ||||| || | || ||||| Sbjct 620 GAGAGCAAAAAATCTTCCTTTTAGTTTCAGCTC---TTCTTTTGCTCTCAGACCGAT 567 >seq8251 Length=2688 Score = 129 bits (142), Expect = 4e-26 Identities = 244/357 (68%), Gaps = 9/357 (3%) Strand=Plus/Minus Query 4477 AAAGAATTCATGGGTTCTAGATATTAAGTTGGGGTATCCCAAAAATTGTCCCATTACCTT 4536 |||||||||||| ||||| | | || || || |||| |||||| | ||||| || Sbjct 592 AAAGAATTCATGTGTTCTCGTAAACAAATTAGGTAATCCAAAAAATCGACCCATGACTGA 533 Query 4537 GAATGTGGGATTATTGGCTGCTCCCCTCTGATGATTGTTCCATTTTTCATAATCTACATG 4596 ||| |||| ||| | | || || |||| ||||||||| || |||||||| ||||| Sbjct 532 GAAGACCGGATCATTTCCCTCACCTCTTTGATAATTGTTCCACTTCTCATAATCAACATG 473 Query 4597 GTTGGCAAAGCTTACATGATCATAATTATCCGTACCTTGACCATATGTGTTGTCCATTAA 4656 || || | | | | | ||||||| | | || || ||| ||| | ||| | Sbjct 472 ATTTGCTATGGTCGCCTCATCATAACTCTGAGTGGTCTGTCCAGATGAAGCTTGCATCAT 413 Query 4657 TTTTTTAGTCAAAACGGTGG---AGTTATCTGCCATGGTTAGACCTTTAAATAATGGGAC 4713 || || | |||||| ||| || ||||| |||| ||| || | | || || Sbjct 412 CTTGTTG---ACTACGGTGTTCTAGTCGTCAGCCATTGTTAATCCTGTACAGAGAGGAAC 356 Query 4714 AAAATGCTTCTTGATCAGATATTCTGTTATTACGAAGTATTCTCTCAACTCCCAGGACAT 4773 |||||||||||| |||| ||| || ||||| || ||||| || | | ||| ||| Sbjct 355 AAAATGCTTCTTAATCAAATACTCCGTTATGACAAAGTAATCACGAAGAGACCAACTCAT 296 Query 4774 GAGCGCAAAAAATCTTCCTTTTATTTTCAGTTCACGCTCTTTGCCTTTAAGTCCGAT 4830 ||| ||||||||||||||||||| |||||| || ||||| || | || ||||| Sbjct 295 GAGAGCAAAAAATCTTCCTTTTAGTTTCAGCTC---TTCTTTTGCTCTCAGACCGAT 242 >seq1814 Length=63972 Score = 129 bits (142), Expect = 4e-26 Identities = 244/357 (68%), Gaps = 9/357 (3%) Strand=Plus/Minus Query 4477 AAAGAATTCATGGGTTCTAGATATTAAGTTGGGGTATCCCAAAAATTGTCCCATTACCTT 4536 |||||||||||| ||||| | | || || || |||| |||||| | ||||| || Sbjct 1998 AAAGAATTCATGTGTTCTCGTAAACAAATTAGGTAATCCAAAAAATCGACCCATGACTGA 1939 Query 4537 GAATGTGGGATTATTGGCTGCTCCCCTCTGATGATTGTTCCATTTTTCATAATCTACATG 4596 ||| |||| ||| | | || || |||| ||||||||| || |||||||| ||||| Sbjct 1938 GAAGACCGGATCATTTCCCTCACCTCTTTGATAATTGTTCCACTTCTCATAATCAACATG 1879 Query 4597 GTTGGCAAAGCTTACATGATCATAATTATCCGTACCTTGACCATATGTGTTGTCCATTAA 4656 || || | | | | | ||||||| | | || || ||| ||| | ||| | Sbjct 1878 ATTTGCTATGGTCGCCTCATCATAACTCTGAGTGGTCTGTCCAGATGAAGCTTGCATCAT 1819 Query 4657 TTTTTTAGTCAAAACGGTGG---AGTTATCTGCCATGGTTAGACCTTTAAATAATGGGAC 4713 || || | |||||| ||| || ||||| |||| ||| || | | || || Sbjct 1818 CTTGTTG---ACTACGGTGTTCTAGTCGTCAGCCATTGTTAATCCTGTACAGAGAGGAAC 1762 Query 4714 AAAATGCTTCTTGATCAGATATTCTGTTATTACGAAGTATTCTCTCAACTCCCAGGACAT 4773 |||||||||||| |||| ||| || ||||| || ||||| || | | ||| ||| Sbjct 1761 AAAATGCTTCTTAATCAAATACTCCGTTATGACAAAGTAATCACGAAGAGACCAACTCAT 1702 Query 4774 GAGCGCAAAAAATCTTCCTTTTATTTTCAGTTCACGCTCTTTGCCTTTAAGTCCGAT 4830 ||| ||||||||||||||||||| |||||| || ||||| || | || ||||| Sbjct 1701 GAGAGCAAAAAATCTTCCTTTTAGTTTCAGCTC---TTCTTTTGCTCTCAGACCGAT 1648 >seq2296 Length=40579 Score = 104 bits (114), Expect = 2e-18 Identities = 189/275 (69%), Gaps = 9/275 (3%) Strand=Plus/Minus Query 4559 CCCCTCTGATGATTGTTCCATTTTTCATAATCTACATGGTTGGCAAAGCTTACATGATCA 4618 || || |||| ||||||||| || |||||||| ||||| || || | | | | | |||| Sbjct 1979 CCTCTTTGATAATTGTTCCACTTCTCATAATCAACATGATTTGCTATGGTCGCCTCATCA 1920 Query 4619 TAATTATCCGTACCTTGACCATATGTGTTGTCCATTAATTTTTTAGTCAAAACGGTGG-- 4676 ||| | | || || ||| ||| | ||| | || || | |||||| Sbjct 1919 TAACTCTGAGTGGTCTGTCCAGATGAAGCTTGCATCATCTTGTTG---ACTACGGTGTTG 1863 Query 4677 -AGTTATCTGCCATGGTTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATAT 4735 ||| || ||||| |||| ||| || | | || |||||||||||||| |||| ||| Sbjct 1862 TAGTCGTCAGCCATTGTTAATCCTGTACAGAGAGGAACAAAATGCTTCTTAATCAAATAC 1803 Query 4736 TCTGTTATTACGAAGTATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTT 4795 || ||||| || ||||| || | | ||| |||||| |||||||||||||||||| Sbjct 1802 TCCGTTATGACAAAGTAATCACGAAGAGACCAACTCATGAGAGCAAAAAATCTTCCTTTT 1743 Query 4796 ATTTTCAGTTCACGCTCTTTGCCTTTAAGTCCGAT 4830 | |||||| || ||||| || | || ||||| Sbjct 1742 AGTTTCAGCTC---TTCTTTTGCTCTCAGACCGAT 1711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35825998469520