Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_001560.1 Length=11161 Score E Sequences producing significant alignments: (Bits) Value seq2708 136 3e-28 >seq2708 Length=213413 Score = 136 bits (150), Expect = 3e-28 Identities = 252/365 (69%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 6320 AAGGAGAGGGAACTGAAGTTGGCAGGTAGATTTTTCTCCCTAATGTCTTGGAAATTGCGA 6379 |||||| |||| ||||| ||| |||||||| | | ||||| ||| | | ||| Sbjct 50359 AAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCGA 50300 Query 6380 GAATACTTTGTAATTACCGAATATTTGATAAAGACTCATTTCGTCCCTATGTTTAAAGGC 6439 || |||||||| || || ||||| |||| ||| ||||| || || |||| || || Sbjct 50299 GAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGGT 50240 Query 6440 CTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAAGATGTTAGATTCCTCATCCGGC 6499 ||||| |||| || |||||||| |||| || ||| ||| | || ||| | || Sbjct 50239 CTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGGA 50180 Query 6500 CAAGGATTGAAGTCAT-ATGAGGCAATTTGCATAGCCAATCACATTGATTACGAAAAATG 6558 |||||| || | || |||| | | ||| || ||||| | || ||||| ||||| Sbjct 50179 CAAGGAG-GATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAAATG 50121 Query 6559 GAATAACCACCAAAGGAAGTTATCAAACGGCCCAGTGTTCCGAGTTATGGGCCAGTTCTT 6618 |||||| || || ||||| |||| | |||||| ||| | |||||||| || ||| | Sbjct 50120 GAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATTCCT 50061 Query 6619 AGGTTATCCATCCTTAATCGAGAGAACTCATGAATTTTTTGAGAAAAGTCTT--ATATAC 6676 || ||||| ||||||| | || ||||| | ||| |||||||| | || || Sbjct 50060 TGGCTATCCTCACTTAATCACTCGGACACATGAGATATTT--GAAAAGTCATGGATCTAT 50003 Query 6677 TACAA 6681 ||||| Sbjct 50002 TACAA 49998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35598675947000