Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_001560.1
Length=11161
Score E
Sequences producing significant alignments: (Bits) Value
seq2708 136 3e-28
>seq2708
Length=213413
Score = 136 bits (150), Expect = 3e-28
Identities = 252/365 (69%), Gaps = 6/365 (2%)
Strand=Plus/Minus
Query 6320 AAGGAGAGGGAACTGAAGTTGGCAGGTAGATTTTTCTCCCTAATGTCTTGGAAATTGCGA 6379
|||||| |||| ||||| ||| |||||||| | | ||||| ||| | | |||
Sbjct 50359 AAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCGA 50300
Query 6380 GAATACTTTGTAATTACCGAATATTTGATAAAGACTCATTTCGTCCCTATGTTTAAAGGC 6439
|| |||||||| || || ||||| |||| ||| ||||| || || |||| || ||
Sbjct 50299 GAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGGT 50240
Query 6440 CTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAAGATGTTAGATTCCTCATCCGGC 6499
||||| |||| || |||||||| |||| || ||| ||| | || ||| | ||
Sbjct 50239 CTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGGA 50180
Query 6500 CAAGGATTGAAGTCAT-ATGAGGCAATTTGCATAGCCAATCACATTGATTACGAAAAATG 6558
|||||| || | || |||| | | ||| || ||||| | || ||||| |||||
Sbjct 50179 CAAGGAG-GATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAAATG 50121
Query 6559 GAATAACCACCAAAGGAAGTTATCAAACGGCCCAGTGTTCCGAGTTATGGGCCAGTTCTT 6618
|||||| || || ||||| |||| | |||||| ||| | |||||||| || ||| |
Sbjct 50120 GAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATTCCT 50061
Query 6619 AGGTTATCCATCCTTAATCGAGAGAACTCATGAATTTTTTGAGAAAAGTCTT--ATATAC 6676
|| ||||| ||||||| | || ||||| | ||| |||||||| | || ||
Sbjct 50060 TGGCTATCCTCACTTAATCACTCGGACACATGAGATATTT--GAAAAGTCATGGATCTAT 50003
Query 6677 TACAA 6681
|||||
Sbjct 50002 TACAA 49998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35598675947000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |