Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_002803.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq2708 114 9e-22 >seq2708 Length=213413 Score = 114 bits (126), Expect = 9e-22 Identities = 237/348 (68%), Gaps = 6/348 (2%) Strand=Plus/Minus Query 6236 AGGGAAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTGATGTCATGGCAATT 6295 || ||| || | ||| | |||| | || ||||| || | ||||||| ||||| | Sbjct 50363 AGCGAAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGAT 50304 Query 6296 GAGGGAGTACTTTGTAATTACAGAGTATCTGATCAAGACACATTATGTTCCGCTCTTCAA 6355 | ||||||||||| || || || || ||||||||| |||| |||||| | ||||| Sbjct 50303 TCGAGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAA 50244 Query 6356 GGGATTAACGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGATGTTAGATAACACTAA 6415 ||| | || |||| || ||||||||| | ||| | || ||| | || | | | Sbjct 50243 GGGTCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGC 50184 Query 6416 TGGGCAAGGCTTGGA--CGACTACTCATCTATATGCATTGCGAACCACATTGATTATGAA 6473 ||| ||||| ||| || || | || | ||||||||| || | || || || Sbjct 50183 TGGACAAGG--AGGATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAG 50126 Query 6474 AAATGGAACAATCATCAACGGAAAGAATCCAATGGGCCTGTATTTCGAGTCATGGGTCAA 6533 |||||||| |||||||| ||||||| || | | || ||||| | || ||||| ||| Sbjct 50125 AAATGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAA 50066 Query 6534 TTCTTAGGATACCCTCGACTGTTTGA-AAGGACACATGAATTCTTTGA 6580 ||| | || || |||| ||| | | |||||||||| | ||||| Sbjct 50065 TTCCTTGGCTATCCTC-ACTTAATCACTCGGACACATGAGATATTTGA 50019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35144292847272