Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_020803.1 Length=11487 Score E Sequences producing significant alignments: (Bits) Value seq2708 113 3e-21 >seq2708 Length=213413 Score = 113 bits (124), Expect = 3e-21 Identities = 188/270 (70%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 6698 TGATGTCATGGGAATTGAGAGAATATTTTGTAATAACAGAATACTTAATCAAGACACACT 6757 ||||||| ||| | | |||| || ||||| || || |||||| | |||||| || | Sbjct 50319 TGATGTCCTGGCAGATTCGAGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATT 50260 Query 6758 ATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGATATGACGGAAGT--TGTAAAGAA 6815 ||| || || ||||| || | || |||| |||||| | || ||| ||| || | Sbjct 50259 TTGTTCCATTGTTCAAGGGTCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAA--A 50202 Query 6816 AATGCTAGAAAGGAGTCAAGGGCAGGGAGAAGATGACTACGAGCACATCAGCATTGCCAA 6875 |||| | || || || || |||| | ||| || || ||| |||||| || Sbjct 50201 AATGATTGAGAGCTCGGCTGGACAAGGAGGATCTGATTATGAAACTGTCACCATTGCGAA 50142 Query 6876 CCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAAGGAATCAAATGGGCCTGTGTT 6935 || | ||||| ||||| ||||||||||||||||| || || |||| | || || || Sbjct 50141 TCATGTAGACTACGAGAAATGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATT 50082 Query 6936 CAGAGTCATGGGACAATTCCTAGGATATCC 6965 ||| || ||||| |||||||| || ||||| Sbjct 50081 CAGGGTTATGGGGCAATTCCTTGGCTATCC 50052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36641837147784