Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_020806.1 Length=11088 Score E Sequences producing significant alignments: (Bits) Value seq2708 136 3e-28 >seq2708 Length=213413 Score = 136 bits (150), Expect = 3e-28 Identities = 264/388 (68%), Gaps = 4/388 (1%) Strand=Plus/Minus Query 6276 AGGGAAGGAAAGAGAATTGAAGATAGCCGGGAGATTTTTCTCACTAATGTCGTGGAAGCT 6335 || |||||| | || ||||||| || |||||||| || | ||||| ||| || | Sbjct 50363 AGCGAAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGAT 50304 Query 6336 GAGAGAATATTTTGTGATCACGGAATATCTAATTAAGACACACTTTGTACCACTTTTCCA 6395 |||| || |||||||| || ||||| || || ||| || ||||| ||| | ||| | Sbjct 50303 TCGAGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAA 50244 Query 6396 CGGCTTGACAATGGCAGATGACATGACGGCTGTAATAAAGAAAATGTTGGAAAGTTCAAG 6455 || |||| |||| ||||| | || | || || |||||| | || || || Sbjct 50243 GGGTCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGC 50184 Query 6456 TGGACAGGGTCTAAAAGATTATTCGGCAGTATGCATTGCAAACCACATTGACTATGAGAA 6515 |||||| || | |||||| | || |||||| || || | ||||| ||||| Sbjct 50183 TGGACAAGGAGGATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAA 50124 Query 6516 ATGGAACAACCATCAGAGGAAACGGTCAAATGAACCAATTTTTAAAGTCATGGGTCAATT 6575 |||||| || |||||||||||| ||||| || ||| | || | || ||||| ||||| Sbjct 50123 ATGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATT 50064 Query 6576 CTTGGGGTTTCCCAACCTTATATCGAGGACTCATGAATTCTTTGAGAAAAGTC--TCATC 6633 | | || | ||| || | || | |||| ||||| | ||| |||||||| ||| Sbjct 50063 CCTTGGCTATCCTCACTTAATCACTCGGACACATGAGATATTT--GAAAAGTCATGGATC 50006 Query 6634 TATTATAATGGAAGGCCTGATTTGATGA 6661 ||||| || ||| |||||| |||| Sbjct 50005 TATTACAACAATAGGGGTGATTTAATGA 49978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35365084635168