Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_022581.1 Length=11806 Score E Sequences producing significant alignments: (Bits) Value seq2708 107 1e-19 >seq2708 Length=213413 Score = 107 bits (118), Expect = 1e-19 Identities = 197/287 (69%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 6846 GGACGGTTCTTTTCTCTAATGTCCTGGGAATTGAGGGAGTATTTTGTAATAACTGAATAC 6905 ||| | || ||| | | ||||||||| | | | ||||| ||||| || ||||||||| Sbjct 50335 GGAAGATTTTTTGCATTGATGTCCTGGCAGATTCGAGAGTACTTTGTGATGACTGAATAC 50276 Query 6906 CTGATCAAAACTCATTACGTCCCTCTCTTTAAAGGATTGACCATGGCAGATGACATGACG 6965 |||||||| |||| || || | || || || |||| |||| ||||| | || Sbjct 50275 CTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGGTCTGACTGTGGCTGATGATCTAACC 50216 Query 6966 GAGGTC--GTCAAGAAGATGTTAGAAAGAAGTCAAGGACAAGGAGAGGATGATTACGAGC 7023 || ||||| || || | || || |||||||||| |||||| || Sbjct 50215 ACAGTGATGTCAAAAA--TGATTGAGAGCTCGGCTGGACAAGGAGGATCTGATTATGAAA 50158 Query 7024 ACGTCAGCATTGCCAACCACATTGATTATGAAAAATGGAACAACCATCAAAGGAAAGAGT 7083 |||| |||||| || || | || || || |||||||| || ||||| |||||||||| Sbjct 50157 CTGTCACCATTGCGAATCATGTAGACTACGAGAAATGGAATAATCATCAGAGGAAAGAGT 50098 Query 7084 CTAACGGCCCGGTGTTCAGAGTCATGGGACAATTTCTGGGGTACCCT 7130 | | | ||| || ||||| || ||||| ||||| || || || ||| Sbjct 50097 CAACAGACCCAGTATTCAGGGTTATGGGGCAATTCCTTGGCTATCCT 50051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37662599181680