Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_024473.1 Length=11123 Score E Sequences producing significant alignments: (Bits) Value seq2708 114 9e-22 >seq2708 Length=213413 Score = 114 bits (126), Expect = 9e-22 Identities = 207/294 (70%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 6247 GGGAGATTCTTCTCATTGATGTCATGG-AGATTAAGGGAATATTTTGTGATCACGGAGTA 6305 || ||||| || |||||||||| ||| ||||| | || || |||||||| || || || Sbjct 50335 GGAAGATTTTTTGCATTGATGTCCTGGCAGATTC-GAGAGTACTTTGTGATGACTGAATA 50277 Query 6306 CTTAATCAAAACATACTACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCAC 6365 | | ||||| | | ||||| ||||| ||||| | ||| |||| ||||| || || Sbjct 50276 CCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGGTCTGACTGTGGCTGATGATCTAAC 50217 Query 6366 ATCGGTGATTAAGAAGATGATGGACAGTTCATCAGGTCAAGG--GCTCGATGATTATTCA 6423 | ||||| || ||||| || || || | || ||||| | || ||||||| | Sbjct 50216 CACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGGACAAGGAGGATC--TGATTATGAA 50159 Query 6424 TCAGTTTGTTTGGCTAACCATATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGAA 6483 | || | || || ||| | ||||||||||| |||||||| ||||| || || || Sbjct 50158 ACTGTCACCATTGCGAATCATGTAGACTACGAGAAATGGAATAATCATCAGAGGAAAGAG 50099 Query 6484 TCTAATGGTCCCA-TCTTCAGAGTCATGGGACAGTTTCTGGGTTATCCATCACT 6536 || || | |||| | ||||| || ||||| || || || || ||||| ||||| Sbjct 50098 TC-AACAGACCCAGTATTCAGGGTTATGGGGCAATTCCTTGGCTATCC-TCACT 50047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35477080469608