Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_025341.1 Length=11139 Score E Sequences producing significant alignments: (Bits) Value seq2708 145 5e-31 >seq2708 Length=213413 Score = 145 bits (160), Expect = 5e-31 Identities = 249/359 (69%), Gaps = 2/359 (1%) Strand=Plus/Minus Query 6308 AGGACGGTTCTTTTCACTCATGTCGTGGAAACTAAGAGAATATTTTGTTGTCACAGAATA 6367 |||| | || ||| || | ||||| ||| | | |||| || ||||| | || ||||| Sbjct 50336 AGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCGAGAGTACTTTGTGATGACTGAATA 50277 Query 6368 CCTAATCAAAGAACATTTCGTCCCTCTCTTCAATGGATTGACTATGGCGGATGACATGAC 6427 ||| ||||| ||||| || || | ||||| || ||||| |||| ||||| | || Sbjct 50276 CCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGGTCTGACTGTGGCTGATGATCTAAC 50217 Query 6428 CACCGTAATATCAAAACTAATGGATCGCACTCAGGGCCAAGGAGGAGAGGACTACACCCA 6487 ||| || || |||||| | || || || | || ||||||||| || || Sbjct 50216 CACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGGACAAGGAGGATCTGATTATGAAAC 50157 Query 6488 AGTTTGCATTGCTAATCATATCGATTATGAAAAGTGGAACAATCATCAGAG-AAAGCGTG 6546 || |||||| |||||| | || || || || ||||| ||||||||||| |||| || Sbjct 50156 TGTCACCATTGCGAATCATGTAGACTACGAGAAATGGAATAATCATCAGAGGAAAGAGT- 50098 Query 6547 CAACCGGACCTGTGTTCATAGTCATGGGACAATTCCTTGGATTTCCTAAACTGATCTATA 6606 |||| | || || |||| || ||||| ||||||||||| | |||| | | ||| | Sbjct 50097 CAACAGACCCAGTATTCAGGGTTATGGGGCAATTCCTTGGCTATCCTCACTTAATCACTC 50038 Query 6607 GAACACATGAGTTCTTTGAATCTAGCTGGGTGTATTACAATGCTAGACCTGATTTAATG 6665 | ||||||||| | |||||| ||| | |||||||| ||| |||||||||| Sbjct 50037 GGACACATGAGATATTTGAAAAGTCATGGATCTATTACAACAATAGGGGTGATTTAATG 49979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35528278565352