Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_025358.1 Length=15024 Score E Sequences producing significant alignments: (Bits) Value seq2708 100 3e-17 >seq2708 Length=213413 Score = 100 bits (110), Expect = 3e-17 Identities = 258/388 (66%), Gaps = 4/388 (1%) Strand=Plus/Minus Query 10163 AGCTAAGGAACGAGAACTTAAAGAAGA-AGGTAGATTCTTTTCTTTAATGTCTTACGAAT 10221 ||| ||||| || || || |||| | ||| ||||| ||| | || ||||| | | Sbjct 50363 AGCGAAGGAGCGGGAG-TTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGA 50305 Query 10222 TGAGGGATTATTTTGTATCTACTGAATACCTGATCAAGAAATATTTTGTACCCTTATTTG 10281 | | || || ||||| |||||||||||||||||| ||||||| || || || Sbjct 50304 TTCGAGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCA 50245 Query 10282 AAGGTCTAACAATGGCTGATGATTTGAATACAGTAATTAAGAAGATGTTGGATGTCTCAA 10341 | ||||| || ||||||||||| | | ||||| || || ||| | || ||| Sbjct 50244 AGGGTCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGG 50185 Query 10342 GCGGCCAGGGAACCAGAGAATATGATTATATAACTATTGCAAACAACATCGATTATGAAA 10401 || || ||| || ||||| | | || ||||| || | | || || || | Sbjct 50184 CTGGACAAGGAGGATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGA 50125 Query 10402 AATGGAATAATTATCAAAGGATAGAGTCTAACGGTCCAGTATTTACTGTCATGGGAAAAT 10461 ||||||||||| |||| |||| |||||| | | |||||||| | || ||||| ||| Sbjct 50124 AATGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAAT 50065 Query 10462 TTTTGGGGCTA-CCTAATCTCTTTACAAGAACTCATGAATTCTTCCAAAAAAGCTTGATT 10520 | | ||||| ||| | | | || | || ||||| | || |||| | ||| Sbjct 50064 TCCT-TGGCTATCCTCACTTAATCACTCGGACACATGAGATATTTGAAAAGTCATGGATC 50006 Query 10521 TATTATAACCAAAGGCCTGATTTAATGA 10548 ||||| ||| | ||| ||||||||||| Sbjct 50005 TATTACAACAATAGGGGTGATTTAATGA 49978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47956566760186