Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_025376.1 Length=11096 Score E Sequences producing significant alignments: (Bits) Value seq2708 152 4e-33 >seq2708 Length=213413 Score = 152 bits (168), Expect = 4e-33 Identities = 243/344 (71%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 6318 AAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCCCTAATGTCATGGCAGTTAAGG 6377 |||||| | || ||||| | | ||||||||||| | | ||||| |||||| | | Sbjct 50359 AAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCGA 50300 Query 6378 GAGTACTTCGTCATCACAGAGTACTTGATCAAAACACACTATGTCCCGTTGTTCAAGGGA 6437 |||||||| || || || || ||| ||||||| || | ||| || ||||||||||| Sbjct 50299 GAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGGT 50240 Query 6438 CTGACGATGGCAGATGACCTTACATCCGTTGTGAAGAAGATGTTGGACAACACAAATGGA 6497 ||||| |||| ||||| || || | || || || ||| | || | | | |||| Sbjct 50239 CTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGGA 50180 Query 6498 CAAGGATTGGA--TGACTACTCCTCTATCTGTATTGCCAACCACATTGACTACGAAAAAT 6555 |||||| ||| ||| || || || ||||| || || | |||||||| |||| Sbjct 50179 CAAGGA--GGATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAAAT 50122 Query 6556 GGAATAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGTTTCGAGTAATGGGACAGTTTC 6615 ||||||||||||||||||||||||| | | ||||| || | || ||||| || || | Sbjct 50121 GGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATTCC 50062 Query 6616 TAGGGTATCCTAGACTGTTTGA-AAGGACACATGAGTTCTTTGA 6658 | || |||||| ||| | | ||||||||||| | ||||| Sbjct 50061 TTGGCTATCCT-CACTTAATCACTCGGACACATGAGATATTTGA 50019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35390683683040