Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_025384.1 Length=11190 Score E Sequences producing significant alignments: (Bits) Value seq2708 109 4e-20 >seq2708 Length=213413 Score = 109 bits (120), Expect = 4e-20 Identities = 242/363 (67%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 6286 GAAAGAGAGAGAGATTAAGGACATCGGACGCTTCTTCGCGCTCATGAGTTGGATGGTGCG 6345 ||| ||| | ||| | ||| || ||| | || || || | ||| ||| | | || Sbjct 50360 GAAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCG 50301 Query 6346 GGAGTACTTTGTTATCACAGAATATCTCATCAAAGAGTTCTACCTCCCCCTCTTCTCCGG 6405 ||||||||||| || || ||||| || ||||| | | | || | ||| || Sbjct 50300 AGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGG 50241 Query 6406 ACTCACCATGGCGGATGACTTCAACACAGTCACCGACAAAATGCTGAAGTGCAGCGACGG 6465 || || |||| ||||| | | |||||| | |||||| | || || | || Sbjct 50240 TCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGG 50181 Query 6466 ACAAGGGACAAATGACTACAAAACTGTGACCATTGCCAACCACCTGGACTACACTAAATG 6525 |||||| | ||| || ||||||| |||||||| || || | |||||| ||||| Sbjct 50180 ACAAGGAGGATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAAATG 50121 Query 6526 GAACAACCACCAGCGGGCAGAAGCAAACAATCCGGTATTCAAAGTGATGGGGCAATTCCT 6585 ||| || || ||| || ||| ||| | || ||||||| || |||||||||||||| Sbjct 50120 GAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATTCCT 50061 Query 6586 GGGGTACCCCAATCTATTCACCAGGTCCCACGAGATCTTCCAGAAGTCACTGATCTATTA 6645 || || || | || |||| || | || ||||| || | |||||| ||||||||| Sbjct 50060 TGGCTATCCTCACTTAATCACTCGGACACATGAGATATTTGAAAAGTCATGGATCTATTA 50001 Query 6646 CAA 6648 ||| Sbjct 50000 CAA 49998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35691472495536