Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_025387.1 Length=11492 Score E Sequences producing significant alignments: (Bits) Value seq2708 138 8e-29 >seq2708 Length=213413 Score = 138 bits (152), Expect = 8e-29 Identities = 218/308 (71%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 6653 TTGATGTCATGGGAGCTCAGGGAGTACTTTGTGGTGACTGAGTATCTGATCAAGAAGCAT 6712 |||||||| ||| || | | |||||||||||| ||||||| || ||||||||| |||| Sbjct 50320 TTGATGTCCTGGCAGATTCGAGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCAT 50261 Query 6713 TTTGTCCCTTTGTTTAAGGGGTTGGCCATGGCTGATGACCTGACAGAGGTGATAAAAAAG 6772 ||||| || ||||| ||||| || | |||||||||| || || ||||| ||| Sbjct 50260 TTTGTTCCATTGTTCAAGGGTCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAA 50201 Query 6773 ATGCTGGACAGTGCATATGGCCAGGGACTGGA--CGACTACAGTGCAGTGTGTATTGCCA 6830 ||| | || || | ||| || ||| ||| || || | || ||||| | Sbjct 50200 ATGATTGAGAGCTCGGCTGGACAAGGA--GGATCTGATTATGAAACTGTCACCATTGCGA 50143 Query 6831 ACCACATTGATTATGAGAAGTGGAACAACCACCAGAGGAAGGAGTCCAACAGA-TATGTA 6889 | || | || || ||||| ||||| || || |||||||| |||| ||||||| ||| Sbjct 50142 ATCATGTAGACTACGAGAAATGGAATAATCATCAGAGGAAAGAGT-CAACAGACCCAGTA 50084 Query 6890 TTCAGAGTTATGGGTCAATGTTTGGGGTACCCTAACTTGATTGAACGGACTCATGAGTTC 6949 ||||| |||||||| |||| | || || ||| |||| || ||||| |||||| | Sbjct 50083 TTCAGGGTTATGGGGCAATTCCTTGGCTATCCTCACTTAATCACTCGGACACATGAGATA 50024 Query 6950 TTTGAGAA 6957 ||||| || Sbjct 50023 TTTGAAAA 50016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36657836552704