Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_025392.1 Length=11121 Score E Sequences producing significant alignments: (Bits) Value seq2708 163 2e-36 >seq2708 Length=213413 Score = 163 bits (180), Expect = 2e-36 Identities = 258/366 (70%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 6283 AAAGAGAGAGAATTGAAGATTGCAGGTAGATTCTTTTCATTGATGTCATGGAAATTGCGA 6342 || ||| | || ||||||| | ||| ||||| ||| |||||||||| ||| | | ||| Sbjct 50359 AAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCGA 50300 Query 6343 GAATATTTTGTGATAACCGAATATCTGATCAAAACGCATTTTGTCCCTCTCTTTTATGGA 6402 || || |||||||| || ||||| |||||||| ||||||||| || | || | || Sbjct 50299 GAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGGT 50240 Query 6403 CTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAAATGCTAGAAAGTTCATCCGGT 6462 || || ||||||||||| | || |||| || |||||| | || || || | || Sbjct 50239 CTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGGA 50180 Query 6463 CAAGGGTTGAATGACT-ATTCTGCAA---TCTCAATCGCAAATCACATAGATTATGAGAA 6518 ||||| | || || ||| || || || | || || ||||| |||| || ||||| Sbjct 50179 CAAGG--AGGAT--CTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAA 50124 Query 6519 ATGGAACAATCACCAGAGAAGAACATCAAACGAACCTGTATTCAAAGTGATGGGACAATT 6578 |||||| ||||| ||||| | | |||| || || ||||||| || ||||| ||||| Sbjct 50123 ATGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATT 50064 Query 6579 TCTGGGATATCCAAATTTGATATCACGCACCCATGAATTCTTTGAGAAGAGTTTGATTTA 6638 || || ||||| | || || | || || ||||| | ||||| ||| | ||| || Sbjct 50063 CCTTGGCTATCCTCACTTAATCACTCGGACACATGAGATATTTGAAAAGTCATGGATCTA 50004 Query 6639 TTATAA 6644 ||| || Sbjct 50003 TTACAA 49998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35470680707640