Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_028230.1 Length=12020 Score E Sequences producing significant alignments: (Bits) Value seq2708 154 1e-33 >seq2708 Length=213413 Score = 154 bits (170), Expect = 1e-33 Identities = 254/364 (70%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 7205 AGCAAAAGAAAGGGAGATGAAAAGAATCGGAAGAtttttttCATTAATGTCTTGGGAATT 7264 ||| || || ||||| |||| | || |||||||||||| |||| ||||| ||| | | Sbjct 50363 AGCGAAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGAT 50304 Query 7265 AAGAGAATATTTTGTTTCTACTGAATATCTGATaaaaaaaTATTATGTTCCATTATTCAA 7324 |||| || ||||| |||||||| ||||| || ||| ||||||||| ||||| Sbjct 50303 TCGAGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAA 50244 Query 7325 GGGATTGACAATGGCAGATGGATTAATGACAGTGGTGAAGAAAATGATTGATTCATCATG 7384 ||| |||| |||| |||| ||| |||||| || ||||||||||| || Sbjct 50243 GGGTCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGC 50184 Query 7385 CGGGCAAGGA-AATCTAGATTACAACACTGTATCAATTGCCAATCATATAGATTATACAA 7443 || |||||| |||| ||||| | ||||| | ||||| |||||| |||| || | Sbjct 50183 TGGACAAGGAGGATCT-GATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGA 50125 Query 7444 AGTGGAACAATCACCAGAGAAGGAAGTCCAATCACCCTGTTTTTACTGTGATGGGACAGT 7503 | ||||| ||||| ||||| | |||| | |||| || || | || ||||| || | Sbjct 50124 AATGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAAT 50065 Query 7504 TTTTGGGGTACCCGAACCTGATCACTAGAACTCATGAGTTCTTCGAAAAAAGCTGGATAT 7563 | | || || || || | |||||| | || |||||| | || ||||| ||||| | Sbjct 50064 TCCTTGGCTATCCTCACTTAATCACTCGGACACATGAGATATTTGAAAAGTCATGGATCT 50005 Query 7564 ATTA 7567 |||| Sbjct 50004 ATTA 50001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38347373712256