Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_028236.1 Length=11072 Score E Sequences producing significant alignments: (Bits) Value seq2708 170 1e-38 >seq2708 Length=213413 Score = 170 bits (188), Expect = 1e-38 Identities = 244/343 (71%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 6265 AGGAAGATTCTTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTA 6324 ||||||||| ||| | ||||||| ||| || | ||||||| || ||| |||| || || Sbjct 50336 AGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCGAGAGTACTTTGTGATGACTGAATA 50277 Query 6325 CTTGATAAAGGAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGAC 6384 | |||| ||| ||||| ||||| || || || || ||||| |||||||||| | || Sbjct 50276 CCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGGTCTGACTGTGGCTGATGATCTAAC 50217 Query 6385 AACAGTTATATCCAAGCTGATGGATAGAACGCAGGGGCAAGGAGGGAGTGATTATTCTCA 6444 ||||| || || || |||| || || || || |||||||| ||||||| Sbjct 50216 CACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGGACAAGGAGGATCTGATTATG---- 50161 Query 6445 AATCTGT----ATTGCAAATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGG 6500 || |||| ||||| |||||| |||| || ||||| ||||| ||||| || || || | Sbjct 50160 AAACTGTCACCATTGCGAATCATGTAGACTACGAGAAATGGAATAATCATCAGAGGAAAG 50101 Query 6501 ATGCCACTGGTCCAGTTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAATAT 6560 | | || | ||||| |||| || ||||| || || | || ||||| | ||||| Sbjct 50100 AGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATTCCTTGGCTATCCTCACTTAATCA 50041 Query 6561 ACCGGACACATGAATTCTTTGAAAATAGCTGGATATACTACAA 6603 ||||||||||| | |||||||| ||||| || ||||| Sbjct 50040 CTCGGACACATGAGATATTTGAAAAGTCATGGATCTATTACAA 49998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35313886539424