Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_028236.1
Length=11072
Score E
Sequences producing significant alignments: (Bits) Value
seq2708 170 1e-38
>seq2708
Length=213413
Score = 170 bits (188), Expect = 1e-38
Identities = 244/343 (71%), Gaps = 8/343 (2%)
Strand=Plus/Minus
Query 6265 AGGAAGATTCTTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTA 6324
||||||||| ||| | ||||||| ||| || | ||||||| || ||| |||| || ||
Sbjct 50336 AGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCGAGAGTACTTTGTGATGACTGAATA 50277
Query 6325 CTTGATAAAGGAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGAC 6384
| |||| ||| ||||| ||||| || || || || ||||| |||||||||| | ||
Sbjct 50276 CCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGGTCTGACTGTGGCTGATGATCTAAC 50217
Query 6385 AACAGTTATATCCAAGCTGATGGATAGAACGCAGGGGCAAGGAGGGAGTGATTATTCTCA 6444
||||| || || || |||| || || || || |||||||| |||||||
Sbjct 50216 CACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGGACAAGGAGGATCTGATTATG---- 50161
Query 6445 AATCTGT----ATTGCAAATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGG 6500
|| |||| ||||| |||||| |||| || ||||| ||||| ||||| || || || |
Sbjct 50160 AAACTGTCACCATTGCGAATCATGTAGACTACGAGAAATGGAATAATCATCAGAGGAAAG 50101
Query 6501 ATGCCACTGGTCCAGTTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAATAT 6560
| | || | ||||| |||| || ||||| || || | || ||||| | |||||
Sbjct 50100 AGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATTCCTTGGCTATCCTCACTTAATCA 50041
Query 6561 ACCGGACACATGAATTCTTTGAAAATAGCTGGATATACTACAA 6603
||||||||||| | |||||||| ||||| || |||||
Sbjct 50040 CTCGGACACATGAGATATTTGAAAAGTCATGGATCTATTACAA 49998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35313886539424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |