Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_028239.1 Length=16133 Score E Sequences producing significant alignments: (Bits) Value seq2708 172 6e-39 >seq2708 Length=213413 Score = 172 bits (190), Expect = 6e-39 Identities = 274/389 (70%), Gaps = 8/389 (2%) Strand=Plus/Minus Query 11300 GCTAAAGAGAGGGAATTGAAAGATGCTGGGAGGtttttttCATTAATGAGCTGGGAGCTG 11359 || || ||| |||| ||||| | || || |||||| |||| ||| |||| || | Sbjct 50362 GCGAAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGATT 50303 Query 11360 AGGGAGTACTTCGTATTTACTGAATACCTAATTAAAGAGCATTTTGTACCATTATTTAAG 11419 | |||||||| || | ||||||||||| || || ||||||||| ||||| || ||| Sbjct 50302 CGAGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAAG 50243 Query 11420 GGTCTGACTATGGCTGATGACTTACAAACAGTTATTAAGAAGATGATAGATGTGTCTTCT 11479 ||||||||| |||||||||| || ||||| || || ||||| || || || Sbjct 50242 GGTCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGCT 50183 Query 11480 GGTCA---AGGCACTGAGACATATGAGAATATCACCATTGCAAATAACATAGATTATGAG 11536 || || ||| |||| ||||| | | |||||||||| ||| | |||| || ||| Sbjct 50182 GGACAAGGAGGATCTGA---TTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAG 50126 Query 11537 AAATGGAATAATTATCAAAGGTATGAATCTAATCATGCAATATTCACAGTGATGGGGCAA 11596 |||||||||||| |||| ||| | || || | | || |||||| || ||||||||| Sbjct 50125 AAATGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAA 50066 Query 11597 TTTTTAGGGTATCCAAAGTTAATTGCAAGAACTCATGAGTTTTTTGAGAAAAGCCTAG-T 11655 || | || ||||| | ||||| | | || |||||| | ||||| ||| | | | | Sbjct 50065 TTCCTTGGCTATCCTCACTTAATCACTCGGACACATGAGATATTTGA-AAAGTCATGGAT 50007 Query 11656 TTATTATAACCAAAGACCTGACTTAATGA 11684 ||||| ||| | || ||| ||||||| Sbjct 50006 CTATTACAACAATAGGGGTGATTTAATGA 49978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51505231105088