Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_028241.1 Length=14478 Score E Sequences producing significant alignments: (Bits) Value seq2708 149 6e-32 >seq2708 Length=213413 Score = 149 bits (164), Expect = 6e-32 Identities = 269/389 (69%), Gaps = 6/389 (2%) Strand=Plus/Minus Query 9648 AGGGAAAGAGAGGGAATTGAAAGAAGCCGGACGATTCTTTTCCTTAATGTCCTGGGAATT 9707 || ||| ||| |||| ||||| ||| |||| ||| | || ||||||||| | | Sbjct 50363 AGCGAAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGAT 50304 Query 9708 AAGGGAATATTTCGTTGTAACTGAATTACTGATTAAACAACATTATGTAAAGTTGTTCAA 9767 | || || || || | ||||||| ||||| || |||| ||| |||||||| Sbjct 50303 TCGAGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAA 50244 Query 9768 AGGTTTGACCATGGCAGATGATCTCCAAACTGTCATAAAGAAAATGCTTGATACCTCACA 9827 ||| |||| |||| |||||||| || || || |||||| |||| | ||| Sbjct 50243 GGGTCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGC 50184 Query 9828 TGGTCAGGGAACCCGTACATATGATGCCATCACCATTGCCAATAACATAGACTATGAAAA 9887 ||| || ||| | ||||| | |||||||||| ||| | ||||||| || || Sbjct 50183 TGGACAAGGAGGATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAA 50124 Query 9888 ATGGAATAATTATCAGAGAATGGAATCAAACGGTCCTGTATTCAGAGTAATGGGTCAATT 9947 |||||||||| ||||||| | || |||| | || |||||||| || ||||| ||||| Sbjct 50123 ATGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATT 50064 Query 9948 CTTGGGATATCCTAATTTGAT-ACTCAGGACCCATGAGTTTTTTCAGAAAAGT--TTAAT 10004 | | || |||||| | || || |||| |||| |||||| | ||| ||||||| | || Sbjct 50063 CCTTGGCTATCCTCACTTAATCACTC-GGACACATGAGATATTT--GAAAAGTCATGGAT 50007 Query 10005 TTATTATAATCAAAGACCTGATTTGATGA 10033 ||||| || | || |||||| |||| Sbjct 50006 CTATTACAACAATAGGGGTGATTTAATGA 49978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46209433547998