Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_028246.1 Length=14627 Score E Sequences producing significant alignments: (Bits) Value seq2708 127 2e-25 >seq2708 Length=213413 Score = 127 bits (140), Expect = 2e-25 Identities = 239/349 (68%), Gaps = 2/349 (1%) Strand=Plus/Minus Query 9770 AGCTAAAGAGAGAGAATTAAAGATAGAAGGTAGAtttttttCATTGATGTCATATGACAT 9829 ||| || ||| | || || |||| ||| ||||||||| |||||||||| | | || Sbjct 50363 AGCGAAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGAT 50304 Query 9830 GAGGGATTACTTCGTAATGACTGAATATTTGATaaaaaaaTATTATGTACCATTATTCAA 9889 | || ||||| || ||||||||||| |||| || ||| ||| ||||| ||||| Sbjct 50303 TCGAGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAA 50244 Query 9890 AGGATTGACCATGGCTGATGATCAAAATACAGTAGTAAAGAAAATGCTCAAAGTTTCTAA 9949 || |||| |||||||||||| || ||||| | |||||| | | || Sbjct 50243 GGGTCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGC 50184 Query 9950 AGGTCAAGGGCTAACAGATTATAAAGAGATAACATTTGCTAATCACTTGGATTATGAGAA 10009 || ||||| | | |||||| || | || |||| ||||| | || || ||||| Sbjct 50183 TGGACAAGGAGGATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAA 50124 Query 10010 GTGGAATAATTATCAAAGGAGGGAATCAAACGGTCCGGTGTTCAGAGTAATGGGCCAGTT 10069 ||||||||| |||| |||| || |||| | || || ||||| || ||||| || || Sbjct 50123 ATGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATT 50064 Query 10070 TTTAGGTCTA-CCTCACTTAATAGAAAGAACTCACGAGTTCTTTGAAAA 10117 | || ||| ||||||||||| | || || ||| | |||||||| Sbjct 50063 CCTTGG-CTATCCTCACTTAATCACTCGGACACATGAGATATTTGAAAA 50016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46686215322020