Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_028255.1 Length=11003 Score E Sequences producing significant alignments: (Bits) Value seq2708 118 7e-23 >seq2708 Length=213413 Score = 118 bits (130), Expect = 7e-23 Identities = 248/365 (68%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 6183 AAAGAGAGAGAATTGAA-ACTAGCCGGAAGATTCTTTTCCTTGATGTCTTGGAAATTACG 6241 || ||| | || ||||| |||| |||||||| ||| | |||||||| ||| | | || Sbjct 50359 AAGGAGCGGGAGTTGAAGACTATA-GGAAGATTTTTTGCATTGATGTCCTGGCAGATTCG 50301 Query 6242 TGAATATTTTGTAATCACGGAATATCTTATCAAAACACACTTTGTCCCCATGTTCAAGGG 6301 || || ||||| || || ||||| || ||||| || ||||| || |||||||||| Sbjct 50300 AGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGG 50241 Query 6302 ACTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaaaTGTTGGATACATCCTCAGG 6361 || || |||| ||||||||||| | || || ||||||| | || | || | || Sbjct 50240 TCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGG 50181 Query 6362 TCAAGGATTGGA--CAATTACGAGTCCATTTGTATCGCGAATCACATTGATTATGAGAAA 6419 |||||| ||| |||| || | | || |||||||| | || || |||||| Sbjct 50180 ACAAGGA--GGATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAAA 50123 Query 6420 TGGAACAACCATCAACGCAAGGAATCCAATGGGCCTGTATTTCGTGTGATGGGACAGTTC 6479 ||||| || ||||| | || || || | | || ||||| | || ||||| || ||| Sbjct 50122 TGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATTC 50063 Query 6480 CTAGGATACCCAAACCTGATTGAGAGGACACACGAATTCTTCGAGAAGAGCTTGATCTAC 6539 || || || || || | || ||||||| || | || || ||| | |||||| Sbjct 50062 CTTGGCTATCCTCACTTAATCACTCGGACACATGAGATATTTGAAAAGTCATGGATCTAT 50003 Query 6540 TATAA 6544 || || Sbjct 50002 TACAA 49998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35093094751528