Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_031079.1 Length=11843 Score E Sequences producing significant alignments: (Bits) Value seq2708 100 2e-17 >seq2708 Length=213413 Score = 100 bits (110), Expect = 2e-17 Identities = 204/303 (67%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 6789 GAAGGAAAGGGAGATCAAGAAGAATGGGAGGTTCTTCGCACTCATGTCCTGGGACCTTCG 6848 |||||| ||||| | |||| | || || || || ||| | ||||||||| | |||| Sbjct 50360 GAAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCG 50301 Query 6849 GGAGTACTTTGTATCCACTGAATATCTTATTAAAATGTTCTATGTCCCTTTGTTCCAAGG 6908 ||||||||||| |||||||| || || || || | ||| || |||||| | || Sbjct 50300 AGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGG 50241 Query 6909 TCTGACCATGGCGGATGATCTGAACTCTGTCACCAAAAAGATCCTTGGGTGCACCTTCGG 6968 |||||| |||| |||||||| | | | || | ||| || ||| | || | || Sbjct 50240 TCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGG 50181 Query 6969 TCAAGGGCTTGCAGGGTACACTGCAGTTACATTCACTAACCACCTAGATTACGAAAAGTG 7028 ||||| | | || | || || | | || || |||| ||||| || || Sbjct 50180 ACAAGGAGGATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAAATG 50121 Query 7029 GAACAACCATCAGAGGCGGGAGGCCACTGACCCGGTTTTCAGAGTGATGGGTCAGTTCTT 7088 ||| || ||||||||| ||| | || ||||| || ||||| || ||||| || ||| | Sbjct 50120 GAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATTCCT 50061 Query 7089 TGG 7091 ||| Sbjct 50060 TGG 50058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37780994778088