Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_031240.1 Length=11541 Score E Sequences producing significant alignments: (Bits) Value seq2708 194 1e-45 >seq2708 Length=213413 Score = 194 bits (214), Expect = 1e-45 Identities = 276/386 (72%), Gaps = 2/386 (1%) Strand=Plus/Minus Query 6457 AGAGAAAGAAAGAGAGTTGAAGATAGGAGGAAGATTTTTCGCTTTAATGTCTTGGGAGAT 6516 || ||| || | |||||||||| |||||||||||| || || ||||| ||| |||| Sbjct 50363 AGCGAAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGAT 50304 Query 6517 TAGAGATTATTTTGTAATGACAGAATATTTAATTAAAACTCATTTTGTGCCTCTCTTTGA 6576 | |||| || ||||| ||||| ||||| | || || |||||||| || | || | Sbjct 50303 TCGAGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAA 50244 Query 6577 CGGATTAACAATGGCTGATGATCTAACAACTGTTATCGGAAAGATT-TTGCGAAACACTG 6635 || | || |||||||||||||||| || || || ||| || ||| || | | | Sbjct 50243 GGGTCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAG-CTCGG 50185 Query 6636 AAGGACAAGGAGAAGATGGATATGAAAGTGTCACCTTCGCAGATCATATAGATTACGAAA 6695 |||||||||| | || ||||||| ||||||| | || ||||| |||| ||||| | Sbjct 50184 CTGGACAAGGAGGATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGA 50125 Query 6696 AATGGAACAATCATCAGAGAGGAGAGGCAAATAATCCAACTTTCAAAGTTATGGGACAAT 6755 ||||||| ||||||||||| |||| ||| | ||| |||| |||||||| |||| Sbjct 50124 AATGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAAT 50065 Query 6756 TTTTAGGATACCCCAATTTAATTCAGAGAACTCATGAAATATTTGAGAAATCATGGATAT 6815 | | || || || | ||||| | || ||||| |||||||| || |||||||| | Sbjct 50064 TCCTTGGCTATCCTCACTTAATCACTCGGACACATGAGATATTTGAAAAGTCATGGATCT 50005 Query 6816 ATTATAATCGAAGGGGAGACTTATTG 6841 |||| || ||||| || ||| || Sbjct 50004 ATTACAACAATAGGGGTGATTTAATG 49979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36814630720920