Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_031268.1 Length=8683 Score E Sequences producing significant alignments: (Bits) Value seq2708 161 5e-36 >seq2708 Length=213413 Score = 161 bits (178), Expect = 5e-36 Identities = 247/347 (71%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 3684 AAGGAGCGAGAGTTAAAAGACG-TGGGAAGATTTTTCTCTCTGATGACCTGGGATCTGAG 3742 |||||||| ||||| || ||| | ||||||||||| | ||||| ||||| | | | Sbjct 50359 AAGGAGCGGGAGTTGAA-GACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCG 50301 Query 3743 AGAGTATTTTGTATCCACTGAGTACCTCATTAAGATGTATTATGTTCCCTTGTTTGAAGG 3802 |||||| ||||| ||||| ||||| || ||| || ||| |||||| ||||| | || Sbjct 50300 AGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGG 50241 Query 3803 ACTCACCATGGCAGATGATCTAAAATCTGTAACACGAAAGATACTGGAGTGTACCACTGG 3862 || || |||| |||||||||| | || | ||| || | ||| | | |||| Sbjct 50240 TCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGG 50181 Query 3863 TCACGGTCAGATCGG-TTACAAGGTAGTCAGCTTTGCTAATCACTTAGACTATGAGAAAT 3921 || || |||| | ||| | |||| | |||| ||||| ||||||| ||||||| Sbjct 50180 ACAAGGAG-GATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAAAT 50122 Query 3922 GGAACAATCATCAGAGGAAAAAGTCAACCTTCCCCGTCTTCAAGGTTATGGGTCAGTTCC 3981 |||| ||||||||||||||| ||||||| ||| || |||| ||||||||| || |||| Sbjct 50121 GGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATTCC 50062 Query 3982 TTGGGATGCCAAACCTATTCGCTCAAACTCATGATTTCTTCGAACAG 4028 |||| || || || || ||| || ||||| | || ||| || Sbjct 50061 TTGGCTATCCTCACTTAATCACTCGGACACATGAGATATTTGAAAAG 50015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27669370868648