Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_031690.1 Length=11308 Score E Sequences producing significant alignments: (Bits) Value seq2708 134 1e-27 >seq2708 Length=213413 Score = 134 bits (148), Expect = 1e-27 Identities = 249/362 (69%), Gaps = 4/362 (1%) Strand=Plus/Plus Query 4492 GTAATATATCAGTGATTTTTCAAAGAATTCATGAGTTCGAGATATTAGTTTTGGATACCC 4551 |||||| ||| ||| |||||||| | ||||| || |||| |||| | ||||| || Sbjct 50000 GTAATAGATCCATGACTTTTCAAATATCTCATGTGTCCGAGTGATTAAGTGAGGATAGCC 50059 Query 4552 AAGAAACTTTCCCATCACATCAAATACAGGAT-TATTGGCT-TTGGCTCGTTGATGGTTA 4609 ||| || | ||||| || ||||| || | | ||| || || ||| ||||| ||| Sbjct 50060 AAGGAATTGCCCCATAACCCTGAATACTGGGTCTGTTGACTCTTTCCTC--TGATGATTA 50117 Query 4610 TTCCATTTGCTATAATCAAAGTGATTGGCGATACAGATGTTCTCGTACCCTTCACTTCCT 4669 |||||||| || || | ||||| || || || | || || | | |||| Sbjct 50118 TTCCATTTCTCGTAGTCTACATGATTCGCAATGGTGACAGTTTCATAATCAGATCCTCCT 50177 Query 4670 TGACCTGAAGTTGTATCCATCATTTTCTTTATGACGGTAGTCATATCATCTGCCATAGTT 4729 || || | | | || |||||||| || || || || | |||||| |||| ||| Sbjct 50178 TGTCCAGCCGAGCTCTCAATCATTTTTGACATCACTGTGGTTAGATCATCAGCCACAGTC 50237 Query 4730 AGTCCTTTAAACAATGGAACAAAGTGAGTCTTGATTAGGTGTTCTGTTATTACAAAATAC 4789 || || || |||||||||||||| || |||||| |||| ||| || || ||||| ||| Sbjct 50238 AGACCCTTGAACAATGGAACAAAATGCAACTTGATCAGGTATTCAGTCATCACAAAGTAC 50297 Query 4790 TCTCGTAAAGCCCAGGTCAATAGAGCATAAAATCTTCCTCCAATCTTGATCTCTCGCTCT 4849 ||||| | ||||| || | ||| ||||||||||| | |||| | ||| ||||| Sbjct 50298 TCTCGAATCTGCCAGGACATCAATGCAAAAAATCTTCCTATAGTCTTCAACTCCCGCTCC 50357 Query 4850 TT 4851 || Sbjct 50358 TT 50359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36069058451648