Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_031691.1 Length=11238 Score E Sequences producing significant alignments: (Bits) Value seq2708 174 1e-39 >seq2708 Length=213413 Score = 174 bits (192), Expect = 1e-39 Identities = 264/368 (72%), Gaps = 12/368 (3%) Strand=Plus/Plus Query 4454 TTGTAATAAATCAGACTCTGTTCAAAGAATTCATGGGTTCTAGATATTAAGTTGGGGTAT 4513 |||||||| ||| || |||||| | ||||| || | || ||||||| || || Sbjct 49998 TTGTAATAGATCCATGACTTTTCAAATATCTCATGTGTCCGAGTGATTAAGTGAGGATAG 50057 Query 4514 CCCAAAAATTGTCCCATTACCTTGAATG-TGGGATTATTGGCTGCTCCCCTCTGATGATT 4572 || | ||||| ||||| ||| ||||| |||| | ||| || || |||||||||||| Sbjct 50058 CCAAGGAATTGCCCCATAACCCTGAATACTGGGTCTGTTGACT-CTTTCCTCTGATGATT 50116 Query 4573 GTTCCATTTTTCATAATCTACATGGTTGGCAAAGCTTACATGATCATAATTA--TCCGTA 4630 |||||||| || || |||||||| || |||| | | ||| ||||||| | ||| Sbjct 50117 ATTCCATTTCTCGTAGTCTACATGATTCGCAATGGTGACAGTTTCATAATCAGATCCT-- 50174 Query 4631 CCTTGACCATATGTGTTGTCCATTAATTTTTTAGTCAAAACGGTGG--AGTT-ATCTGCC 4687 ||||| ||| | | | || || | |||| | || || |||| || | ||| ||| Sbjct 50175 CCTTGTCCAGCCGAGCTCTCAATCATTTTT---GACATCACTGTGGTTAGATCATCAGCC 50231 Query 4688 ATGGTTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCTGTTATTACG 4747 | || ||||| || || ||||| ||||||||| ||||||||| ||||| || || || Sbjct 50232 ACAGTCAGACCCTTGAACAATGGAACAAAATGCAACTTGATCAGGTATTCAGTCATCACA 50291 Query 4748 AAGTATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTTATTTTCAGTTCA 4807 ||||| |||| | || ||||||||| | ||||||||||||||| | | |||| || Sbjct 50292 AAGTACTCTCGAATCTGCCAGGACATCAATGCAAAAAATCTTCCTATAGTCTTCAACTCC 50351 Query 4808 CGCTCTTT 4815 ||||| || Sbjct 50352 CGCTCCTT 50359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35845066782768