Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_015522.1 Length=6423 Score E Sequences producing significant alignments: (Bits) Value seq9095 87.8 7e-14 >seq9095 Length=6977 Score = 87.8 bits (96), Expect = 7e-14 Identities = 192/286 (67%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 5086 GGTCGCTACGCCACCTTTTGCGGCTACTATGTCGGCTTCACAGGCGCTGTGCGGTCTCC- 5144 || || ||||||||||||||||| |||||||| || | | || || || |||| ||| Sbjct 2819 GGCCGTTACGCCACCTTTTGCGGTTACTATGTGGGATCAATGGGAGCAGTCCGGTGTCCT 2760 Query 5145 -ACCCGCCCTCTTTGCCAAGCTCATGATCGCCGTGGACGACGAGTCGATCGACGACAAGC 5203 | ||| || | |||| || ||| |||| | || |||| || || | ||||| Sbjct 2759 AAACCG--CTTCTCACCAAACTTATGCTCGCTGGAGATGACGGCTCTCTCTATGACAAAA 2702 Query 5204 TCATCGCCTACCTCACCGAGTTCACGGTGGGCCATTCTCTTGGCGACGCCTTCTGGACCA 5263 | | | ||| | | || ||| | || | ||| || | || |||| | | ||| Sbjct 2701 TAGACTCGTACGTAGCTGAATTCTCAGTTGACCACTCATTGGGTGACGACATGTGGGAAG 2642 Query 5264 TCCTCCCCGTCGAGACCGTCCCTTACCAGAGCGCGTGTTTCGACTTCTTCTGCCGACGCG 5323 | | ||||| ||| ||| | || |||||||| || ||||||||| | || | | | Sbjct 2641 TTTTGCCCGTTGAGCAAGTCTCCTATCAGAGCGCCTGCTTCGACTTCATTTGTAGGCATG 2582 Query 5324 CCCCAGCGCAAGCCAAAGTCATGCTAAGGCTTGGTGAGGCTCCCGA 5369 |||| | ||| ||||||| |||| ||| || |||||||| || Sbjct 2581 CCCCTAGGGAAGTCAAAGTCGTGCTCCAGCTCGGCGAGGCTCCAGA 2536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20430076921464