Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_029063.1 Length=6421 Score E Sequences producing significant alignments: (Bits) Value seq9095 80.6 1e-11 >seq9095 Length=6977 Score = 80.6 bits (88), Expect = 1e-11 Identities = 192/283 (68%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 5084 TTACGCCACCTTCTGCGGGTACTAC-TGTGCCCGAGTGGGTTGCGTGCGGTCCCC-AATC 5141 |||||||||||| ||||| ||||| || | | | |||| || |||| || || | Sbjct 2814 TTACGCCACCTTTTGCGGTTACTATGTGGGATCAA-TGGGAGCAGTCCGGTGTCCTAAAC 2756 Query 5142 GCCTTGTTCGCAAAACTGATGATCGCCGAAGACGACGGATCCATTTCAGACAAACTGGCC 5201 ||| | | | ||||| ||| |||| | ||| ||||| || | | |||||| | | | Sbjct 2755 CGCTTCT-CACCAAACTTATGCTCGCTGGAGATGACGGCTCTCTCTATGACAAAATAGAC 2697 Query 5202 TCGTACCTCATGGAATTCAGCATAGGCCATTCTCTCGGCGATGAACTCTGGCAAGCCCTG 5261 |||||| | |||||| | | ||| || | || || || | ||| ||| || Sbjct 2696 TCGTACGTAGCTGAATTCTCAGTTGACCACTCATTGGGTGACGACATGTGGGAAGTTTTG 2637 Query 5262 CCCCT--AGCCACCGTCTCCTACCAGTCCGCTTGCTTTGACTTCTTCTGTCGACGGGCTC 5319 ||| | ||| | |||||||| ||| ||| ||||| |||||| | ||| | | || | Sbjct 2636 CCCGTTGAGCAA--GTCTCCTATCAGAGCGCCTGCTTCGACTTCATTTGTAGGCATGCCC 2579 Query 5320 CTCCGGAACTCAAGCTGGCCCTCAAGCTCGGCGAGGTTCCCGA 5362 || |||| |||| | | ||| |||||||||||| ||| || Sbjct 2578 CTAGGGAAGTCAAAGTCGTGCTCCAGCTCGGCGAGGCTCCAGA 2536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20423679527720