Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_001560.1 Length=11161 Score E Sequences producing significant alignments: (Bits) Value seq263735 244 8e-61 seq22788 150 1e-32 seq46121 145 5e-31 seq36779 100 2e-17 seq110009 98.7 7e-17 seq250369 93.3 3e-15 >seq263735 Length=2160 Score = 244 bits (270), Expect = 8e-61 Identities = 652/979 (67%), Gaps = 22/979 (2%) Strand=Plus/Plus Query 6239 GCTACCAATTGGAAAGAATTTCTTAAAGAGATTGATGAGAAGGGCTTAGATGATGATGAT 6298 ||||| ||||||||| ||||| | | ||| || |||| || ||| | ||||| | Sbjct 1153 GCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGCCCGATGAGTCT 1212 Query 6299 CTAATTATTGGTCTTAAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTTTTCTCC 6358 ||| |||| || || ||| || ||| ||||| ||||| |||||||||||| || Sbjct 1213 CTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACC 1272 Query 6359 CTAATGTCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATATTTGATAAAGACTC-A 6417 ||||||| ||| || || || || ||||| | ||||||| ||| ||||| | | Sbjct 1273 TTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTT 1332 Query 6418 TTTCGTCCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAA 6477 ||| ||||| | ||| | | || || ||||| || ||||| |||| ||| | ||| || Sbjct 1333 TTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAA 1392 Query 6478 GATGTT--AGATTCCTCATCCGGCCAAGGAT--TGAAGTCATATGAGGCAATTTGCATAG 6533 |||| | | | | || || || ||||||| | | || | | || || || || | Sbjct 1393 GATGATGAATAATTCTGAT--GGTCAAGGATGCCCAGATTAT-TCACGC-ATCTGTATTG 1448 Query 6534 CCAATCACATTGATTACGAAAAATGGAATAACCACCAAAGGAAGTTATCAAACGGCCCAG 6593 | || ||||||||||| |||||||||||| ||||| || ||| || ||| | Sbjct 1449 CTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATG 1508 Query 6594 TGTTCCGAGTTATGGGCCAGTTCTTAGGTTATCCATCCTTAATCGAGAGAACTCATGAAT 6653 | || |||| ||||| || || ||||| || ||| | || || | |||||||||| Sbjct 1509 TATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAAT 1568 Query 6654 TTTTTGAGAAAAGTCTTATATACTACAATGGAAGACCAGACTTGATGCGTGTTCACA-AC 6712 ||||||| ||||| ||||| || ||| | | || || || ||| || | | | || Sbjct 1569 TTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATG-GTCGTAAGAGAC 1627 Query 6713 AACACACTGATCAATTCAACCTCCCAAC-GA--GTTTGTTGGCAAGGACAAGAGGGTGGA 6769 || ||| || |||| | ||| || || |||||| | || || | ||||| Sbjct 1628 GGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGG 1687 Query 6770 CTGGAAGGTCTACGGCAAAAAGGATGGACTATCCTCAATCTACTGGTTATTCAAAGAGAG 6829 ||||| || || | || |||||||||| || | ||| || || | || |||| Sbjct 1688 CTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAGAAGAG 1747 Query 6830 GCTAAAATCAGAAACACTGCTGTCAAAGTCTTGGCACAAGGTGATAATCAAGTTATTTGC 6889 || || ||| || || || || || || ||||| |||||||| |||||||| Sbjct 1748 GCCTCAAGAGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGT 1807 Query 6890 ACACAGTATAAAACG-AAGAAATCGAGAAACGTTGTAG---AATTACAGGGTGCTCTCAA 6945 || || ||||| | | || || ||| || | |||| || || ||| |||| Sbjct 1808 ACTCATTATAAGAGGCAACAAGGCGACCAAGATCGTAGCTTAAACCCACGGT-TGGTCAA 1866 Query 6946 TCAAATGGTTTCTAATAATGAGAAAATTATGACTGCAATCAAAATAGGGACAGGGAAGTT 7005 | | ||| ||||| || | | |||| || |||| || | ||| || | Sbjct 1867 T-ATTTGG--AAAAATAACGATATCCTGATGAAAGCGATCAGAAGGGCTGCAGATAAAAT 1923 Query 7006 AGGACTTTTGATAAATGACGATGAGACTATGCAATCTGCAGATTACTTGAATTATGGAAA 7065 ||||||| | ||||| || || ||||| ||||||| ||| || || |||||||| || Sbjct 1924 AGGACTTATAATAAACGAAGACGAGACAATGCAATAAGCAACTTTTTTAAATTATGGGAA 1983 Query 7066 AATACCGATTTTCCGTGGAGTGATTAGAGGGTTAGAGACCAAGAGATGGTCACGAGTGAC 7125 | | | | | | |||| | | || ||||| || || | |||| ||||| || Sbjct 1984 AGTCTTGTTCATACTTGGAAATTTAATAGCATTAGAAACAAAAAAATGGAGTCGAGTAAC 2043 Query 7126 TTGTGTCACCAATGACCAAATACCCACTTGTGCTAATATAATGAGCTCAGTTTCCACAAA 7185 ||| |||||||| ||||| | ||||||| | ||||| || || ||| ||| || Sbjct 2044 TTGCGTCACCAACGACCAGGTCCCCACTTTGGGAAATATTTTGTCTTCCGTTGTCACCAA 2103 Query 7186 TGCTCTCACCGTAGCTCAT 7204 | | || |||||||||||| Sbjct 2104 TTCCCTAACCGTAGCTCAT 2122 >seq22788 Length=2006 Score = 150 bits (166), Expect = 1e-32 Identities = 310/455 (68%), Gaps = 7/455 (2%) Strand=Plus/Minus Query 6121 AATATACTCTGACAAAAGTCATTCAATGAATAGGTCAGAGGTGTTGAAACATGTCCGAAT 6180 ||||||| ||||||||||| ||| | || | | ||| || | ||| | | | Sbjct 1991 AATATACGGGGACAAAAGTCACTCAGTCAACAAGGATGAGCTGGTCAAAGAGCATCAGGT 1932 Query 6181 GAATCCGAACA-CTCCT--ATCCCTAGTAAAAAGGTGTTGCAGACTATGTTGGACACAAA 6237 ||| ||||||| |||| | | | ||||| ||| | | || | | || || | Sbjct 1931 GAAGCCGAACATGTCCTCATTTACGACTAAAAGGGTCCTTGACACCCTAATCGAGACGCA 1872 Query 6238 GGCTACCAATTGGAAAGAATTTCTTAAAGAGATTGATGAGAAGGGCTTAGATGATGATGA 6297 ||||| |||||||| || || ||| |||| || |||| || |||||||| || || | Sbjct 1871 AGCTACGAATTGGAAGGAGTTCCTTCAAGACATCAATGACAACGGCTTAGACGAAAATTA 1812 Query 6298 TCTAATTATTGGTCTTAAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTTTTCTC 6357 | |||| || || | ||| || || | ||| ||||| | || |||| |||| | Sbjct 1811 CTTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGC 1752 Query 6358 CCTAATGTCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATATTTGATAAAGACTCA 6417 | ||||||| |||||| | || || |||||||| || || || ||| |||| |||| | Sbjct 1751 CTTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTA 1692 Query 6418 TTTCGTCCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAA 6477 || || || | || || || || |||||||| ||||||||||| | || || ||||| Sbjct 1691 TTATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAA 1632 Query 6478 GATGTTAGATTCCTCATCCGGCCAAGGAT-TGAAGTC-ATATGAGGCAATTTGCATAGCC 6535 |||| | | ||| || ||||||| || || | | | || | | |||||||| Sbjct 1631 GATGATGAACCATTCAGATGGTCAAGGATGTGCAGACTACACCAG--AGTCTGCATAGCG 1574 Query 6536 AATCACATTGATTACGAAAAATGGAATAACCACCA 6570 || || || |||||| || ||||| |||||||| Sbjct 1573 AACCATATAGATTACACCAAGTGGAACAACCACCA 1539 >seq46121 Length=3043 Score = 145 bits (160), Expect = 5e-31 Identities = 234/330 (71%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 6375 TGCGAGAATACTTTGTAATTACCGAATATTTGAT-AAAGACTCATTTCGTCCCTATGTTT 6433 || ||||||| || || |||| ||||| | || ||||| |||||||| || |||| Sbjct 1346 TGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAA-CATTTCGTTCCACTGTTC 1288 Query 6434 AAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAAGATGTTAGATTCCTCA 6493 ||||||| || |||||||| || || || | || | ||| |||| || ||| Sbjct 1287 CAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCA 1228 Query 6494 TCCGGCCAAGGAT-TGAAG-TCATATGAGGCAATTTGCATAGCCAATCACATTGATTACG 6551 || ||||||| | || | || || ||||||||| || || ||||| || |||| Sbjct 1227 GATGGGCAAGGATGTCCAGATTATTCAAG--AATTTGCATTGCTAACCACATAGACTACG 1170 Query 6552 AAAAATGGAATAACCACCAAAGGAAGTTATCAAACGGCCCAGTGTTCCGAGTTATGGGCC 6611 |||||||||| ||||| ||| |||| ||| ||| | || |||| ||| ||||||| Sbjct 1169 AAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCC 1110 Query 6612 AGTTCTTAGGTTATCCATCCTTAATCGAGAGAACTCATGAATTTTTTGAGAAAAGTCTTA 6671 ||||| ||| || ||| ||||| || |||||||| || ||||| || ||||| Sbjct 1109 AGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGG 1050 Query 6672 TATACTACAATGGAAGACCAGACTTGATGC 6701 | || || ||||| ||||||||| |||| Sbjct 1049 TGTATTATGTTGGAATACCAGACTTAATGC 1020 >seq36779 Length=13892 Score = 100 bits (110), Expect = 2e-17 Identities = 389/604 (64%), Gaps = 48/604 (8%) Strand=Plus/Plus Query 6305 ATTGGTCTTAAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTTTTCTCCCTAATG 6364 ||||| || | || || |||||||| |||| || ||| | ||||| | || ||| Sbjct 5391 ATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTATG 5450 Query 6365 TCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATATTTGATAAAGACTCATTTCGTC 6424 || ||| | |||||||||||||| || ||||| |||||| | || ||| || || ||| Sbjct 5451 TCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTGTC 5510 Query 6425 CCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAAGATGTTA 6484 || | ||||| || ||||| ||||| |||| | ||| ||| Sbjct 5511 CCATTATTTAAGGGTCTGACTATGGC---CGAT-------GACTCAATAA---------- 5550 Query 6485 GATTCCTCATCCGGCCAAGGAT-TGAAGTCATATGAGGCAATTTGCATAGCCAATCACAT 6543 ||| || ||||| | | || | ||| ||| || |||| ||||| || Sbjct 5551 -----CTCCGATGGACAAGGGTGTCCAGAC-TATACTAAAATCTGTGTAGCGAATCATAT 5604 Query 6544 TGATTACGAAAAATGGAATAACCACCAAAGGAAGTTATCAAACGGCCCAGTGTTCCGAGT 6603 || || ||||||||||| ||||| | | ||||| || ||||| || Sbjct 5605 CGACTATGAAAAATGGAACAACCATAACTCCA----ATCAA-----TATGTATTCCGTGT 5655 Query 6604 TATGGGCCAGTTCTTAGGTTATCCATCCT-TAATCGAGAGAACTCATGAATTTTTTGAGA 6662 ||||||||||| || ||||| || || | |||| || | || |||||||| ||||||| Sbjct 5656 CATGGGCCAGTTTTTGGGTTA-CCCTCATCTAATTGAACGGACCCATGAATTCTTTGAGA 5714 Query 6663 AAAGTCTTATATACTACAATGGAAGACCAGACTTGATGCGTGTTCACA-ACAACACAC-- 6719 ||||| | || || ||| || | || || ||||| | || | | || |||| Sbjct 5715 AAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATG---ATCCAAAGAGAAGACACCT 5771 Query 6720 TGATCAATTCAACCTCCCAACGA--GTTTGTTGGCAAGGACAAGAGGGTGGACTGGAAGG 6777 | |||| ||| | | || ||||| ||| | ||||| | ||||| ||||| || Sbjct 5772 TCCTCAA--CAAGATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGGAGGG 5829 Query 6778 TCTACGGCAAAAAGGATGGACTATCCTCAATCTACTGGTTATTCAAAGAGAGGCTAAAAT 6837 || | || || ||||||| | || ||| || || | | ||| | | | Sbjct 5830 GCTCTGCCAGAAGGGATGGAGCGTTCTGAATTATCTCATTCTGGATGATGAGTCAGAGAA 5889 Query 6838 CAGAAACACTGCTGTCAAAGTCTTGGCACAAGGTGATAATCAAGTTATTTGCACACAGTA 6897 | ||| || ||| || ||| |||| ||||| |||||||| || ||||| || || || Sbjct 5890 GAAAAATACCAATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTACCCACTA 5949 Query 6898 TAAA 6901 ||| Sbjct 5950 CAAA 5953 >seq110009 Length=642 Score = 98.7 bits (108), Expect = 7e-17 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 6343 AGGTAGATTTTTCTCCCTAATGTCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATA 6402 ||| ||||| ||| |||||||||| ||| ||||||||||| ||||| | ||||||| Sbjct 418 AGGAAGATTCTTCGCCCTAATGTCCTGGGCCTTGCGAGAATATTTTGTTTTGACCGAATT 477 Query 6403 TTTGATAAAGACTCATTTCGTCCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAAC 6462 |||||||| | ||| || ||| | ||| | || || |||||||| || ||||| || Sbjct 478 ATTGATAAAAAACTTTTTTGTTCCTTTATTTGATGGACTAACAATGGCCGATGATCTTAC 537 Query 6463 TGCAGTCATTAAAAAGATG 6481 || |||| || |||||| Sbjct 538 TGAGGTCACGAAGAAGATG 556 >seq250369 Length=726 Score = 93.3 bits (102), Expect = 3e-15 Identities = 249/376 (66%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 6305 ATTGGTCTTAAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTTTTCTCCCTAATG 6364 ||||| | | |||||| ||| | || ||||| || || ||||||||| | |||||| Sbjct 484 ATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAATG 425 Query 6365 TCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATATTTGA-TAAAGACTCATTTCGT 6423 |||||| | | || | |||||||| | || || ||| | | |||||| || || || Sbjct 424 TCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGA-ACACTTTGT 366 Query 6424 CCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCATTAAAAAGATGTT 6483 ||| | || ||||| |||||||||| | ||||| || | ||| | | || ||| Sbjct 365 CCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAAATGAA 306 Query 6484 AGA-TTCCTCATCCGGCCAAGGATTGAAGTCA-TATGAGGCAATTTGCATAGCCAATCAC 6541 | | || ||| ||| | ||| ||| | || | || | ||||| ||| || Sbjct 305 AAAGTTACTCGGACGGGC-AGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAAATTAC 247 Query 6542 ATTGATTACGAAAAATGGAATAACCACCAAAGGAAGTTATCAAACGGCCCAGTGTTCCGA 6601 || |||||| |||| |||||||| || ||| ||||| ||| || Sbjct 246 ATCGATTACAAAAAGTGGAATAATCATCAACGGAAG-------------GAGTCTTTACC 200 Query 6602 GTTATGGGCCAGTTCTTAGGTTATCCATCCTTAATCGAGAGAACTCATGAATTTTTTGAG 6661 || ||||| || ||||| || || || || | || | | |||||||| || |||||| Sbjct 199 GTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCTTTGAG 140 Query 6662 AAAAGTCTTATATACT 6677 |||||| || |||| Sbjct 139 --AAGTCTCATCTACT 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35484409292000