Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_002526.1 Length=14900 Score E Sequences producing significant alignments: (Bits) Value seq263735 136 4e-28 >seq263735 Length=2160 Score = 136 bits (150), Expect = 4e-28 Identities = 365/549 (66%), Gaps = 18/549 (3%) Strand=Plus/Plus Query 10069 AGGGAGGtttttttCATTAATGTCTTATGAATTAAGGGATTATTTTGTCTCAACGGAGTA 10128 ||| || |||||| | |||||||| | | ||| | || |||||||| | || || | Sbjct 1257 AGGTAGATTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATT 1316 Query 10129 CTTAATaaaaaaa-TACTTTGTGCCATTATTTGAAGGATTGACAATGGCTGATGACCTAA 10187 |||||||||||| | ||||| || |||||||| || | || ||||||||||| || | Sbjct 1317 TTTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCA 1376 Query 10188 ATACTGTTATCaaaaaaaTGTTAGATGTCTCTAGTGGTCAGGGAACAAGGGAATATGAAT 10247 | || | || || ||| | || ||| |||||| ||| || ||| | Sbjct 1377 CTGAAGTAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCAC 1436 Query 10248 ACATCACAATTGCCAATAATATTGATTATGAAAAATGGAATAACTATCAAAGAATTGAAT 10307 |||| ||||| || | ||||||||| |||||||||||| | || |||| || | Sbjct 1437 GCATCTGTATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGT 1496 Query 10308 CCAATGGGCCGGTGTTCACTGTGATGGGACGATTTTTAGGCTTGCCTAATTTGTTTACTA 10367 |||| | || || | |||||||| | ||||||||| | || | | || | Sbjct 1497 CCAACAAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAAC 1556 Query 10368 GAACTCATGAGTTTTTCCAAAAGAGTTTGATCTATTAC--AACCAAAGACCAGACCTCAT 10425 | |||||||| ||||| |||| || | || |||||| | || | || || | || Sbjct 1557 GGACTCATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCC--CGTCCGGATTTAAT 1614 Query 10426 GATGGTGAGAGGACGGGAATGT-CTGAACAGA---TTGGGAGTGAAAGTGTGTTGGGAAG 10481 | | || ||| ||||| | | | |||| | | | || ||||||||| | | Sbjct 1615 GGTCGTAAGA-GACGGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGG 1673 Query 10482 GACAAAAGGGAGGATTAGAAGGTTTGAGACAAAAGGGATGGAGCATATTAAATTATTTGA 10541 | || || || || | || || | ||||| || ||||||||||| |||||||||||| Sbjct 1674 GCCAGAAAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATTATTTGA 1733 Query 10542 TGATAGAGAGAGAAAG----TAGAGTAAGAAACACAAGAGTTAAAATTCTTGCTCAAGGA 10597 | |||| ||| | | ||||| ||| || | ||| || || | || |||||| Sbjct 1734 TTCTAGA-AGAAGAGGCCTCAAGAGT---AAATACCAAAGTAAATGTTTTAGCCCAAGGA 1789 Query 10598 GACAATCAG 10606 || |||||| Sbjct 1790 GATAATCAG 1798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47402881114504