Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_002803.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq46121 167 2e-37 seq263735 158 8e-35 seq250369 152 4e-33 seq22788 150 1e-32 seq36779 147 2e-31 seq42553 100 2e-17 seq53828 80.6 2e-11 >seq46121 Length=3043 Score = 167 bits (184), Expect = 2e-37 Identities = 408/609 (67%), Gaps = 16/609 (3%) Strand=Plus/Minus Query 6125 CAAGAAGGTTTTAGAGACCATGATAAACAACCCTGCAACAGATTGGCCAACATTCCTTAA 6184 ||||| || ||| ||||| | ||| |||| ||||| |||| ||| | ||||| | Sbjct 1508 CAAGA--GTCTTAAAGACCCTCATAGACAAACCTGCCACAGTCTGGAAAGACTTCCTCCA 1451 Query 6185 -AGCAGTAGATGAAGAGGGATTACCCAGAGATAATCTCATCATTGGATTGAAAGGGAAAG 6243 || | || |||| |||||| | || ||| ||| |||| ||||||| | |||| Sbjct 1450 GAGGATTA-ATGACGAGGGACTTCCTGAAGACTCTCTAGTCATCGGATTGAGGAGAAAAG 1392 Query 6244 AAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTGATGTCATGGCAATTGAGGGAGT 6303 | | || | ||| | ||| | || || | | | ||||| | |||| || | Sbjct 1391 AGCGGGACTTGAAGCGGGTCGGGCGTTTTTTTT----GCTCTCATGACC--TGAGAGAAT 1338 Query 6304 ACTTTGTAATTACAGAGTATCTGATCAAGACACATTATGTTCCGCTCTTCAAGGGATTAA 6363 | || || |||| || || || ||||| ||||| ||||| || ||| | || | | Sbjct 1337 ATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGCCTCA 1278 Query 6364 CGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGATGTTAGATAACACTAATGGGCAAG 6423 | ||||| || || || ||| ||| | |||| |||| |||| | ||||||||| Sbjct 1277 CTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGATGGGCAAG 1218 Query 6424 GCTTGGACGACTACTCATCTATATGCATTGCGAACCACATTGATTATGAAAAATGGAACA 6483 | | || || ||| || |||||||| |||||||| || || ||||||||||||| Sbjct 1217 GATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAAAAATGGAACA 1158 Query 6484 ATCATCAACGGAAAGAATCCAATGGGCCTGTATTTCGAGTCATGGGTCAATTCTTAGGAT 6543 | |||||||||||||||||||| | ||| || | ||| ||||| || ||| ||||| Sbjct 1157 ACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTCCAAGGAT 1098 Query 6544 ACCCTCGACTGTTTGAAAGGACACATGAATTCTTTGAGTCAAGTCTCATTTATTATAACG 6603 |||| || | ||||| ||||| |||||||| ||||| | |||||| | Sbjct 1097 ACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTATTATGTTG 1038 Query 6604 GGAGGCCGGACCTGATG--GATGTGAGAGGGGATTCTTTAGTGAAT-ACAACAGATAAGA 6660 | | || ||| | ||| |||| |||| ||||| | ||| | | ||| | | Sbjct 1037 GAATACCAGACTTAATGCTCCAACGAGATGGGA--CTTTAATCAATAAGGAAAGACACG- 981 Query 6661 TAGTCTGCTGGGAAGGGCAAGCAGGCGGATTAGAAGGGCTTTCGCAGAAAGGATGGAGTG 6720 | ||||||||| | || ||| |||| | | ||||| || | | || || ||||||| Sbjct 980 TTGTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAAGGGCTGGAGTG 921 Query 6721 TACTCAATT 6729 | || |||| Sbjct 920 TTCTTAATT 912 >seq263735 Length=2160 Score = 158 bits (174), Expect = 8e-35 Identities = 240/339 (71%), Gaps = 7/339 (2%) Strand=Plus/Plus Query 6264 GGGAGATTCTTCTCTCTGATGTCATGGCAATTGAGGGAGTACTTTGTAATTACAGAGTAT 6323 || ||||| || | | ||||||||| || | ||||| ||||| | || || | | Sbjct 1258 GGTAGATTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTT 1317 Query 6324 CTGATCAAGACACATTAT-GTTCCGCTCTTCAAGGGATTAACGATGGCCGACGATCTAAC 6382 | || || | || || | || ||| | || | || |||| ||||| || ||||| || Sbjct 1318 TTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCAC 1377 Query 6383 CTCTGTGGTAA---AGAAGATGTTAGATAACACTAATGGGCAAGGCTTGGACGACTACTC 6439 || |||| |||||||| | |||| || |||| ||||| | || || || Sbjct 1378 ---TGAAGTAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTC 1434 Query 6440 ATCTATATGCATTGCGAACCACATTGATTATGAAAAATGGAACAATCATCAACGGAAAGA 6499 | || || ||||| ||||||||||||||| ||||||||| ||||| || | || || Sbjct 1435 ACGCATCTGTATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGA 1494 Query 6500 ATCCAATGGGCCTGTATTTCGAGTCATGGGTCAATTCTTAGGATACCCTCGACTGTTTGA 6559 ||||| | ||||||| |||| ||||||||||| ||||||||||| | ||| | || Sbjct 1495 GTCCAACAAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGA 1554 Query 6560 AAGGACACATGAATTCTTTGAGTCAAGTCTCATTTATTA 6598 | |||| |||||||| ||||| ||| || |||||||| Sbjct 1555 ACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTATTA 1593 >seq250369 Length=726 Score = 152 bits (168), Expect = 4e-33 Identities = 258/374 (69%), Gaps = 16/374 (4%) Strand=Plus/Minus Query 6223 TCATTGGATTGAAAGGGAAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTGA 6282 ||||||| |||| ||| ||||| ||||| | |||| | || ||||| ||| |||| | Sbjct 486 TCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAA 427 Query 6283 TGTCATGGCAATTGAGGGAGTACTTTGTAATTACAGAGTATCTGATCAAGACACATTATG 6342 |||| ||| | | ||| ||||||||| | ||||||||||| || || ||| | || Sbjct 426 TGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTTG 367 Query 6343 TTCCGCTCTTCAAGGGATTAACGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGATGT 6402 | || || ||||| ||||| || |||||| | ||||| ||| || | ||| ||| Sbjct 366 TCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAAATGA 307 Query 6403 TAGA-TAACACTAATGGGCAAGGCTTGGACGACTACTCATCTATATGCATTGCGAACCAC 6461 | | | || | | ||||| || | ||| ||||| || | || || || || Sbjct 306 AAAAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAAATTAC 247 Query 6462 ATTGATTATGAAAAATGGAACAATCATCAACGGAAAGAATCCAATGGGCCTGTATTTCGA 6521 || ||||| |||| ||||| |||||||||||||| || || ||| Sbjct 246 ATCGATTACAAAAAGTGGAATAATCATCAACGGAAGGAGTC-------------TTTACC 200 Query 6522 GTCATGGGTCAATTCTTAGGATACCCTCGACTGTTTGAAAGGACACATGAATTCTTTGAG 6581 ||||||||||||||||| || |||||| || ||| | || ||||| ||||||||| Sbjct 199 GTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCTTTGAG 140 Query 6582 TCAAGTCTCATTTA 6595 ||||||||| || Sbjct 139 --AAGTCTCATCTA 128 >seq22788 Length=2006 Score = 150 bits (166), Expect = 1e-32 Identities = 196/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 6225 ATTGGATTGAAAGGGAAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTGATG 6284 || ||| | | |||||||||| |||| | |||| || |||| ||| | | ||| Sbjct 1804 ATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCTTAATG 1745 Query 6285 TCATGGCAATTGAGGGAGTACTTTGTAATTACAGAGTATCTGATCAAGACACATTATGTT 6344 |||||| || | | ||||||||||| || ||||||||||||||||||| |||||||| Sbjct 1744 TCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATTATGTT 1685 Query 6345 CCGCTCTTCAAGGGATTAACGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGATGTTA 6404 ||| | |||||||| |||| ||||| |||||||||||| ||| | || |||||| | Sbjct 1684 CCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGATGATG 1625 Query 6405 GATAACACTAATGGGCAAGGCTTGGACGACTACTCATCTATATGCATTGCGAACCACATT 6464 | | | |||| ||||| | | |||||| | | ||||| |||||||| || Sbjct 1624 AACCATTCAGATGGTCAAGGATGTGCAGACTACACCAGAGTCTGCATAGCGAACCATATA 1565 Query 6465 GATTATGAAAAATGGAACAATCATCAACGGA 6495 ||||| || |||||||| || || |||| Sbjct 1564 GATTACACCAAGTGGAACAACCACCAGCGGA 1534 >seq36779 Length=13892 Score = 147 bits (162), Expect = 2e-31 Identities = 389/599 (65%), Gaps = 34/599 (6%) Strand=Plus/Plus Query 6223 TCATTGGATTGAAAGGGAAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTGA 6282 |||||||| | | |||||||| || ||| | || | ||||| | || || | || | Sbjct 5389 TCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTA 5448 Query 6283 TGTCATGGCAATTGAGGGAGTACTTTGTAATTACAGAGTATCTGATCAAGACACATTATG 6342 |||| ||| | ||| | || ||||| || |||||||| ||||| |||||| || | || Sbjct 5449 TGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTG 5508 Query 6343 TTCCGCTCTTCAAGGGATTAACGATGGCCGACGATCTAACCTCTGTGGTAAAGAAGATGT 6402 | || | || ||||| | || |||||||| || ||| Sbjct 5509 TCCCATTATTTAAGGGTCTGACTATGGCCGATGA------CTCA---------------- 5546 Query 6403 TAGATAACACTAATGGGCAAGGCTTGGACGACTACTCATCTATATGCATTGCGAACCACA 6462 ||||| | |||| ||||| | ||||| | || || | ||||| || | Sbjct 5547 ---ATAACTCCGATGGACAAGGGTGTCCAGACTATACTAAAATCTGTGTAGCGAATCATA 5603 Query 6463 TTGATTATGAAAAATGGAACAATCATCAACGGAAAGAATCCAATGGGCCTGTATTTCGAG 6522 | || ||||||||||||||||| ||| ||| |||||| |||||| || | Sbjct 5604 TCGACTATGAAAAATGGAACAACCAT-AAC--------TCCAATCAATATGTATTCCGTG 5654 Query 6523 TCATGGGTCAATTCTTAGGATACCCTCGACTGTTTGAAAGGACACATGAATTCTTTGAGT 6582 ||||||| || || || || ||||||| || ||||| |||| ||||||||||||||| Sbjct 5655 TCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGAGA 5714 Query 6583 CAAGTCTCATTTATTATAACGGGAGGCCGGACCTGATGGATGTGAGAGGGGATTCTTTAG 6642 |||| | |||||||| ||| | || || |||||| |||| || | || Sbjct 5715 AAAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATGATCCAAAGAGAAGACACCTTCC 5774 Query 6643 TGAATACAACAGATAAGATAGTCTGCTGGGAAGGGCAAGCAGGCGGATTAGAAGGGCTTT 6702 | || | | | |||| || |||||| | || || || || || | || ||||| | Sbjct 5775 TCAACAAGATTGGAGAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGGAGGGGCTCT 5834 Query 6703 CGCAGAAAGGATGGAGTGTACTCAATTTACTGGTCATCAATCGAGAATCATCTATCAGAA 6762 ||||| |||||||| || || |||| || | | || || ||| | | || Sbjct 5835 GCCAGAAGGGATGGAGCGTTCTGAATTATCTCATTCTGGATGATGAGTCAGAGAAGAAAA 5894 Query 6763 ACACAGTTGTAAAGGTGCTGGCTCAGGGGGACAATCAGGTGATCTGCACGCAGTATAAA 6821 | || ||| || || ||||| || || || |||||||| || || || || || ||| Sbjct 5895 ATACCAATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTACCCACTACAAA 5953 >seq42553 Length=2057 Score = 100 bits (110), Expect = 2e-17 Identities = 180/264 (68%), Gaps = 18/264 (7%) Strand=Plus/Minus Query 6231 TTGAAAGGGAAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCTCTGATGTCATGG 6290 |||| ||||| || |||||| | || | | || ||||| || |||| ||||| ||| Sbjct 611 TTGAGGGGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGG 552 Query 6291 CAATTGAGGGAGTACTTTGTAATTACAGAGTATCTGATCAAGACACATTATGTTCCGCTC 6350 | | | ||||||||||| | |||||||| || ||||| || | || || | Sbjct 551 GATCTTCGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTG 492 Query 6351 TTCAAGGGATTAACGATGGCCGACGATCTAACCTCTGTGGT---AAAGAAGATGTTAGAT 6407 ||||| |||||||| |||||||||||||| | ||| ||| || ||||||| | | Sbjct 491 TTCAAAGGATTAACAATGGCCGACGATCTGA---CTGAGGTTACAAGGAAGATGATGAAC 435 Query 6408 AACACTAATGGGCAAGGCTTGGACGACTACTCATCTATATGCATTGCGAACCACATTGAT 6467 || | || || ||||| ||| || ||||| || || ||||| ||| Sbjct 434 AATTCAAACGGACAAGG------------TTCAAAGATCTGCATAGCAAAACACATCGAT 387 Query 6468 TATGAAAAATGGAACAATCATCAA 6491 ||| ||| ||||| ||||||||| Sbjct 386 TATACAAAGTGGAATAATCATCAA 363 >seq53828 Length=2951 Score = 80.6 bits (88), Expect = 2e-11 Identities = 275/417 (66%), Gaps = 20/417 (5%) Strand=Plus/Minus Query 8100 GCTTATCTGGGCTCAAAAACGTCTGA---AACCACATCCATCTTGCAACCTTGGGAAAAA 8156 ||||||||||| |||| ||| || || ||||| || || ||||||| |||||||| Sbjct 1115 GCTTATCTGGGATCAAGAACATCAGAGAGAACCA-AT--ATAATGCAACCATGGGAAAAG 1059 Query 8157 GATAGCAAGATACCTATCATCAAAAGAGCGACAAAACTGAGAGACAGTATCTCTTGGTTT 8216 | | || | || | ||| |||||| || | ||| ||||| || || |||| Sbjct 1058 TACACAAATGTTCCGCTTATCGCAAGAGCCACCAGACTAAGAGATTCCATATCCGGGTTC 999 Query 8217 GTTCCACCT-GACTCAAAATTGGCCAAAAGCATACA--ACAAAATCTTAAGGCATTGACT 8273 || || | ||||| || ||||| || ||||| || ||| || || |||| Sbjct 998 ATTG-ACATCGACTCGAATTTGGCTAACAGCATTATGGACCTGATCC--AGTCACTGACA 942 Query 8274 GGAGAAGATTGGGAAGAGGATATC--CAAGGATTTAAGAGGACTGGTTCAGCATTGCACC 8331 || || || ||| |||| || ||| ||| || || || || || ||||| | || Sbjct 941 GGTGAGGACTGGAAAGAAGACATCACCAAC--TTCAAAAGAACAGGGTCAGCCCTTCATA 884 Query 8332 GATTCACAACTTCAAGA--GTCAGCAACGGCGGATTTAGTGCCCAAAGTCCTGCCAAATT 8389 |||| || || || | |||| || || || | | ||||||| ||| || || || Sbjct 883 GATTTTCATCTGCACGGATGTCATCA--GGAGGGTACACAGCCCAAAATCCCGCGAAGTT 826 Query 8390 GACCAGAATCATGACCACCACAGACACAATGAGAGACCTGGGAGATCAAAATTACGACTT 8449 | || | || | | ||| || || | ||| ||| |||||| |||||| || || Sbjct 825 GTCCTGGATGACCAGCACTACGGATATTATGGCAGAGTTGGGAGGAGTAAATTATGATTT 766 Query 8450 CATGTTTCAGGCAGGCATCTTGTATAGTCAAATGACAACTGGAGAATTGAGAGAGAA 8506 ||||||||| ||| | |||| | ||||| ||| | |||||| || | || || Sbjct 765 CATGTTTCAAGCATGTCTCTTTTTCGCACAAATCACATCGGGAGAAGTGGGCGACAA 709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35031484696992