Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_007020.1 Length=11440 Score E Sequences producing significant alignments: (Bits) Value seq263735 138 8e-29 seq46121 118 8e-23 seq36779 98.7 7e-17 >seq263735 Length=2160 Score = 138 bits (152), Expect = 8e-29 Identities = 374/568 (66%), Gaps = 6/568 (1%) Strand=Plus/Plus Query 6527 ATTGGAAATCATTTCTTCAACAAATAAACGATAGGGGTTTGCCTGACGATGCTTTATGTA 6586 |||||||| |||| | || | | || || | || |||| || || || || || Sbjct 1160 ATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGCCCGATGAGTCTCTAGTTA 1219 Query 6587 TAGGTCTAAGACCAAAAGAGAGAGAACTGAAGAGAGCTGGTAGGTTTTTTGCCCTGATGA 6646 |||| || || |||||| | ||| |||||||| ||||| |||||| || | ||| Sbjct 1220 TAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGT 1279 Query 6647 GTTGGGAGCTCAGAGAGTACTTCGTTTTTACTGAGTATCTGATTAAGGAACATTTCATTC 6706 |||| | | ||||| || || || || || | | | || || ||| ||| || Sbjct 1280 CATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTC 1339 Query 6707 CTCTT-TTTAAGGGGTTGACGATGGCCGATGATATGACCGGAGTCATCAAGAAACTGCTA 6765 | || ||| | | | || ||||| |||||| | || | ||| | ||||| || | Sbjct 1340 CCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATG 1399 Query 6766 GAGTGCTCCAACGGCCACGGAGAAACAGATTACTCAAATATAACCATATCAAATCACTTA 6825 | || | || || ||| ||||||| ||| || || | || ||| | Sbjct 1400 AATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAACCACATT 1459 Query 6826 GATTACTCGAAATGGAACAATCATCAAAGATATGAATCCAACAAATATGTATTCCAAGTG 6885 ||||| | |||||||| ||||| || ||| | || |||||||| |||||||| |||| Sbjct 1460 GATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTG 1519 Query 6886 ATGGGATCCTTTTTAGGATATCCAAATCTTATCTCTCGCACCCACGAATTTTTCCAAAAA 6945 ||||| ||||||||||| |||| ||| || || || || |||||||| ||||| Sbjct 1520 ATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAA 1579 Query 6946 TCCTTGATATATTTCATAAATAGGCCAGATTTAATGGTCGTAAAAG--GGAACACATTGG 7003 | | || |||| | || | || |||||||||||||||| || ||||| | | Sbjct 1580 AGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAAC-CCTGCA 1638 Query 7004 AGCCTAAGGGTCAGA--TGAGGGTATGCTGGAACGGGCAAGCCGGGGGCCTCGAAGGTCT 7061 | | || |||| || || || ||||| || || || || || || || || Sbjct 1639 AAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACT 1698 Query 7062 TCGTCAAAAAGGGTGGAGTATTGTAAAT 7089 | || ||||| ||||| ||||||||| Sbjct 1699 CAGACAGAAAGGATGGAGCATTGTAAAT 1726 >seq46121 Length=3043 Score = 118 bits (130), Expect = 8e-23 Identities = 204/294 (69%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 6652 GAGCTCAGAGAGTACTTCGTTTTTACTGAGTATCTGATTAAGGAACATTTCATTCCTCTT 6711 || || ||||| || ||||| ||||||| || || || || ||||||||| |||| || Sbjct 1350 GACCTGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTG 1291 Query 6712 TTTAAGGGGTTGACGATGGCCGATGATATGACCGGAGTCATCAAGAAACTGCTAGAGTGC 6771 || | || | || ||||| ||||| | |||| || | ||| || | || | Sbjct 1290 TTCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTT-GAATAA 1232 Query 6772 TCCA-ACGGCCACGGAGAAACAGATTACTCAAATATAACCATATCAAATCACTTAGATTA 6830 | || | || || ||| ||||||| |||| || ||| | || ||| |||| || Sbjct 1231 TTCAGATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTA 1172 Query 6831 CTCGAAATGGAACAATCATCAAAGATATGAATCCAACAAATATGTATTCCAAGTGATGGG 6890 | ||||||||||| |||||| | | ||||||||| || |||| |||||||||||||| Sbjct 1171 CGAAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGG 1112 Query 6891 ATCCTTTTTAGGATATCCAAATCTTATCTCTCGCACCCACGAATTTTTCCAAAA 6944 || |||||| |||||||| ||| | | || || || || || |||| Sbjct 1111 CCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAA 1058 >seq36779 Length=13892 Score = 98.7 bits (108), Expect = 7e-17 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 6601 AAAGAGAGAGAACTGAAGAGAGCTGGTAGGTTTTTTGCCCTGATGAGTTGGGAGCTCAGA 6660 |||||||| || |||| ||||| ||| ||||||| || || ||| |||||| | || Sbjct 5406 AAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTATGTCCTGGGAGTTGCGA 5465 Query 6661 GAGTACTTCGTTTTTACTGAGTATCTGATTAAGGAACATTTCATTCCTCTTTTTAAGGGG 6720 || |||||||| |||| || ||||| || ||||| || || | || | |||||||| Sbjct 5466 GAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTGTCCCATTATTTAAGGGT 5525 Query 6721 TTGACGATGGCCGATGA 6737 |||| ||||||||||| Sbjct 5526 CTGACTATGGCCGATGA 5542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36374310432896