Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_008514.1 Length=11545 Score E Sequences producing significant alignments: (Bits) Value seq263735 178 9e-41 seq22788 120 2e-23 seq36779 113 3e-21 seq250369 107 1e-19 seq46121 107 1e-19 seq53828 78.8 7e-11 >seq263735 Length=2160 Score = 178 bits (196), Expect = 9e-41 Identities = 357/523 (68%), Gaps = 20/523 (4%) Strand=Plus/Plus Query 6700 TCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACGTTTCTTCTC 6759 ||| ||||| ||| | ||| ||||| | ||| | |||| | ||| | || || | Sbjct 1212 TCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTAC 1271 Query 6760 CCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGAATATCTGATCAAACACCA 6819 | | ||||||||| ||||| |||||||| || |||| |||| | | || ||| | | Sbjct 1272 CTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACT 1331 Query 6820 CTTT-GTCCCACTATTTCATGGATTGACTATGGCGGATGACATGACTCAAGTTATGAAGA 6878 ||| ||||| ||||| || || | || ||||| ||||| | ||| |||| | |||| Sbjct 1332 TTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGA 1391 Query 6879 AAATGTTAGACAGAAGTC--AAGGGCAAGGAGAGAATGACTACCAGAGAGTCAGTATTGC 6936 | ||| | || | || || | || |||||| || || | || ||||||| Sbjct 1392 AGATGAT-GA-ATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGC 1449 Query 6937 AAACCATATTGACTATGAAAAGTGGAACAATCACCA----AAGGAGAGAATCAA--ATGG 6990 ||||| ||||| ||| ||| ||||| |||||||| |||||| | ||| ||| Sbjct 1450 TAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGT 1509 Query 6991 ACCAACGTTTCGCGTGATGGGACAATTCTTGGGCTATCCATCTTTGATCGAAAAGACGCA 7050 | ||| | |||||||| ||||| || || || ||| | |||| ||| ||| || Sbjct 1510 A------TTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCA 1563 Query 7051 TGAGTTCTTCGAGAAAAGCCCGATATACTACAATGGCAGGCCGGATTTAATGCAAGTAAC 7110 ||| || || || ||||||| || || ||| | | | |||||||||||| |||| Sbjct 1564 TGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAG 1623 Query 7111 TG---GAAACCAGGTGATCAACTCCACTGATAAACTTGTTTGCTGGCAGGGACAAAAGGG 7167 | ||| || | | ||| || | || | | || || ||| |||| || || || Sbjct 1624 AGACGGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGG 1683 Query 7168 AGGGCTAGAGGGACTAAGACAGAAAGGATGGAGCATTTTGAAT 7210 ||||| |||||||| ||||||||||||||||||||| | ||| Sbjct 1684 TGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAAT 1726 >seq22788 Length=2006 Score = 120 bits (132), Expect = 2e-23 Identities = 208/296 (70%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 6680 AATGGGTTAGACGAAGAAGATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAG 6739 || || ||||||||| | | ||||||||||| | | |||||||||| ||||| | ||| Sbjct 1831 AACGGCTTAGACGAAAATTACTTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAG 1772 Query 6740 AAAGCAGGACGTTTCTTCTCCCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACA 6799 | ||| | | ||| || | |||||||||||| | || ||||| || || || ||| Sbjct 1771 AGGATCGGAAGATATTTCGCCTTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACA 1712 Query 6800 GAATATCTGATCAAACACCACTTTGTCCCACTATTTCATGGATTGACTATGGCGGATGAC 6859 || ||||||||||| | | | ||| || |||| | || | || ||||| || || Sbjct 1711 GAGTATCTGATCAAGAAGTATTATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGAT 1652 Query 6860 ATGACTCAAGTTATGAAGAAAATGTTAGACAGAAGTC--AAGGGCAAGGA-GAGAATGAC 6916 | || | || ||||| || ||| | || | | || | || |||||| | | | ||| Sbjct 1651 CTAACCGAGGTGATGAAAAAGATGAT-GA-ACCATTCAGATGGTCAAGGATGTGCA-GAC 1595 Query 6917 TACCAGAGAGTCAGTATTGCAAACCATATTGACTATGAAAAGTGGAACAATCACCA 6972 ||| |||||| | || || |||||||| || || ||||||||||| ||||| Sbjct 1594 TACACCAGAGTCTGCATAGCGAACCATATAGATTACACCAAGTGGAACAACCACCA 1539 >seq36779 Length=13892 Score = 113 bits (124), Expect = 3e-21 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 6700 TCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACGTTTCTTCTC 6759 ||| || || ||| | | |||||||| || || | || | ||| || || || || | Sbjct 5384 TCTTGTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGC 5443 Query 6760 CCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGAATATCTGATCAAACACCA 6819 |||||||| ||| | || ||||| || ||||| || ||||||||||| ||||| | || Sbjct 5444 ACTTATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCA 5503 Query 6820 CTTTGTCCCACTATTTCATGGATTGACTATGGCGGATGAC 6859 |||||||||| ||||| | || |||||||||| |||||| Sbjct 5504 CTTTGTCCCATTATTTAAGGGTCTGACTATGGCCGATGAC 5543 >seq250369 Length=726 Score = 107 bits (118), Expect = 1e-19 Identities = 243/365 (67%), Gaps = 18/365 (5%) Strand=Plus/Minus Query 6704 GTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACGTTTCTTCTCCCTT 6763 || || || |||| ||| ||||| |||| | |||| | ||| | || ||| | || Sbjct 487 GTCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTA 428 Query 6764 ATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGAATATCTGATCAAACACCACTTT 6823 ||||| ||| | | || | ||| || || | ||||| ||||| || ||| | |||||| Sbjct 427 ATGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTT 368 Query 6824 GTCCCACTATTTCATGGATTGACTATGGCGGATGACATGACTCAAGTTATGAAGAAAATG 6883 ||||| ||||| | |||||||| ||||| |||| |||| |||||| | ||||||| Sbjct 367 GTCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAAATG 308 Query 6884 TTAGACAG-AAGTC--AAGGGCAAGGAGAGAATGACTACCAGAGAGTCAGTATTGCAAAC 6940 | | || | || | ||||| || || ||| || || ||| ||||| Sbjct 307 --AAAAAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAAAT 250 Query 6941 CATATTGACTATGAAAAGTGGAACAATCACCAAAGGAGAGAATCAAATGGACCAACGTTT 7000 | || || || |||||||||| ||||| ||| ||| || || ||| Sbjct 249 TACATCGATTACAAAAAGTGGAATAATCATCAACGGAAGGAGTC-------------TTT 203 Query 7001 CGCGTGATGGGACAATTCTTGGGCTATCCATCTTTGATCGAAAAGACGCATGAGTTCTTC 7060 ||| ||||| |||||||||||||| || | | || | || ||||||||||| Sbjct 202 ACCGTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCTTT 143 Query 7061 GAGAA 7065 ||||| Sbjct 142 GAGAA 138 >seq46121 Length=3043 Score = 107 bits (118), Expect = 1e-19 Identities = 278/418 (67%), Gaps = 18/418 (4%) Strand=Plus/Minus Query 6692 GAAGAAGATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACGT 6751 ||||| ||| || |||||||||| | ||||| | || || ||| | || ||| Sbjct 1425 GAAGACTCTCTAGTCATCGGATTGAGGAGAAAAGAGCGGGACTTGAAGCGGGTCGGGCGT 1366 Query 6752 TTCTTCTCCCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGAATATCTGATC 6811 || || | | | ||||| | | |||| ||||||||| | || ||||| || ||| Sbjct 1365 TTTTTTTGC----TCTCATG--ACCTGAGAGAATATTTCGTCGTTACTGAATACCTAATC 1312 Query 6812 AAACACCACTTTGTCCCACTATTTCATGGATTGACTATGGCGGATGACATGACTCAAGTT 6871 ||| | || || || ||||| || || || | ||||||||||||||| | || | || Sbjct 1311 AAAGAACATTTCGTTCCACTGTTCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTG 1252 Query 6872 ATGAAGAAAATGTTAGACAGAAGTC--AAGGGCAAGGAGAGAATGACTACCAGAGAGTCA 6929 | ||| |||| || | || || | ||||||||| || || ||| | Sbjct 1251 ACACGGAAGGTGTT-GA-ATAATTCAGATGGGCAAGGATGTCCAGATTATTCAAGAATTT 1194 Query 6930 GTATTGCAAACCATATTGACTATGAAAAGTGGAACAATCACCAAAGGAGAGAATCAAATG 6989 | ||||| ||||| || ||||| ||||| |||||||| || ||| ||| |||||| | Sbjct 1193 GCATTGCTAACCACATAGACTACGAAAAATGGAACAACCATCAACGGAAAGAATCCA--- 1137 Query 6990 GACCAAC----GTTTCGCGTGATGGGACAATTCTTGGGCTATCCATCTTTGATCGAAAAG 7045 |||||| || | |||||||| || ||| || || ||| | | ||| | | Sbjct 1136 -ACCAACATGTCTTCCAAGTGATGGGCCAGTTCCAAGGATACCCAAATCTAATCACCAGG 1078 Query 7046 ACGCATGAGTTCTTCGAGAAAAGCCCGATATACTACAATGGCAGGCCGGATTTAATGC 7103 || ||||| ||||| || || || | | | || || ||| | || || ||||||| Sbjct 1077 ACTCATGACTTCTTTGAAAAGAGTCTGGTGTATTATGTTGGAATACCAGACTTAATGC 1020 >seq53828 Length=2951 Score = 78.8 bits (86), Expect = 7e-11 Identities = 115/159 (72%), Gaps = 8/159 (5%) Strand=Plus/Minus Query 7145 GTTTGCTGGCAGGGACAAAAGGGAGGGCTAGAGGGACTAAGACAGAAAGGATGGAGCATT 7204 ||||||||| | ||||| |||||||| || || ||| | ||||| ||||| ||||| ||| Sbjct 2560 GTTTGCTGGAATGGACAGAAGGGAGGACTGGAAGGATTCAGACAAAAAGGGTGGAGTATT 2501 Query 7205 TTGAATCTGTTAATCATCAGGAGAG-AGTCT---AAAATCCGGAACACTCGAGTCCAGAC 7260 | ||| ||||| || || |||| |||| ||| | ||||| ||| | Sbjct 2500 GTAAATTACTTAAT-ATTAGAAGAGTAGTCCTCGAAAGTT---AACACGAAAGTTAATGT 2445 Query 7261 TCTGGCGCAAGGAGACAATCAAGTCATTTGCACCCAATA 7299 | |||| || || || ||||||||||| |||||||| || Sbjct 2444 TTTGGCTCAGGGGGATAATCAAGTCATCTGCACCCATTA 2406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36709219464416