Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_011639.1 Length=13196 Score E Sequences producing significant alignments: (Bits) Value seq263735 212 5e-51 seq46121 136 3e-28 seq22788 134 1e-27 seq250369 125 6e-25 seq110009 109 5e-20 seq53828 89.7 4e-14 seq36779 87.8 2e-13 >seq263735 Length=2160 Score = 212 bits (234), Expect = 5e-51 Identities = 578/861 (67%), Gaps = 48/861 (6%) Strand=Plus/Plus Query 8331 ACCTGCAACTGATTGGAAATCATTCTTGCAAAAGATAAATGACTTTGGATTA---GATTT 8387 |||||| || |||||||| ||| ||||| || | |||||| ||| | ||| Sbjct 1149 ACCTGCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGCCCGATG- 1207 Query 8388 GAAGTCTCTCATCATTGGACTAAAAGCTAAAGAAAGAGAAATGAAACGGATTGGAAGATT 8447 ||||||| | || ||||| || |||||| | |||||||| | || || ||||| Sbjct 1208 --AGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATT 1265 Query 8448 CTTCTCTTTAATGTCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAA 8507 || | ||||||||||||| | | ||||||||||| || || || | | || || Sbjct 1266 TTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAA 1325 Query 8508 GGAA-TATTTTGTTCCTCTATTCCATGGATTAACTATGGCTGATGATCTACAATCT-GTT 8565 || | |||||| || |||| || || |||| |||||||||||||| || | || Sbjct 1326 AAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCT-CACTGAAGTA 1384 Query 8566 ATAAAGAAGATGTTAGAAAATTCTCAAGGCCAAGGATCTAATGATTATGA--GTATGTTT 8623 | ||||||||| | | |||||| | || ||||||| |||||| | || | | Sbjct 1385 ACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGT 1444 Query 8624 CAATAGCAAATCATATTGATTATGAAAAATGGAATAATCACCAAAGGAAAGAATCAAATT 8683 || || || || ||||||||| |||||||||||||||||| || || || || || Sbjct 1445 --ATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACA 1502 Query 8684 ATTATGTTTTCAAAGTAATGGGCCAGTGTTTCGGTCTTCCAA-ACTTATTTACACGAACA 8742 | ||||| || | ||| ||||| || | ||| || |||| || || | ||| || Sbjct 1503 AGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGA-ACGGACT 1561 Query 8743 CATGAATTCTTTGAACAAAGTTTGATTTATTATCCTCAAAGAGCTGATTTGATGCACGTT 8802 |||||||| |||||| |||| | |||||||| | | ||||| ||| ||| Sbjct 1562 CATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTA 1621 Query 8803 GAAGGCGATACACTAACAAACTCGTCCGCATCAC---TGGTGTGTTGGAATGGACAAAAA 8859 || || || || |||| || || || | ||||||||||| || || ||| Sbjct 1622 AGAGACGGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAA 1681 Query 8860 GGGGGTTTAGAAGGATTAAGACAAAAAGGATGGTCAGTAT--TAAATTATTTAGTTATAG 8917 || || | || ||| | ||||| ||||||||| || || |||||||||| || ||| Sbjct 1682 GGTGGGCTGGAGGGACTCAGACAGAAAGGATGG--AGCATTGTAAATTATTTGATTCTAG 1739 Query 8918 A--AAG-GGAATCTAGGATAAGAAACACAAAGGTTAAAGTATTAGCACAAGGGGATAATC 8974 | ||| || || || | ||| || || || || || ||||| ||||| ||||||| Sbjct 1740 AAGAAGAGGCCTCAAG---AGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATC 1796 Query 8975 AAACAATCAGTACTTTTTATCATCTTCAGTCTCATTTTGACGAAAAT-GAA--TTAATCG 9031 | || ||||| |||| | || || ||| || || | | |||| | Sbjct 1797 AGGTTATTTGTACTCATTATAAGAGGCA---ACAAGGCGACCAAGATCGTAGCTTAAACC 1853 Query 9032 ATCAATTGGCCAATATTTGTAAGAATAATAAAGCTA---TTATGAATGCGATTGAAGCAG 9088 | |||| ||||||||| ||| ||||| | || | ||||| ||||| || || Sbjct 1854 CACGGTTGGTCAATATTTG---GAAAAATAACGATATCCTGATGAAAGCGAT--CAGAAG 1908 Query 9089 GG--ACAACTAAATTGGGGTTGATAATAAATCGTGATGAGACTATG--ATAAGTGCCGAT 9144 || || |||| | || | |||||||| || ||||| ||| |||| || | Sbjct 1909 GGCTGCAGATAAAATAGGACTTATAATAAACGAAGACGAGACAATGCAATAA--GCAACT 1966 Query 9145 TATTTAAATTATGGGAAAGTC 9165 | ||||||||||||||||||| Sbjct 1967 TTTTTAAATTATGGGAAAGTC 1987 >seq46121 Length=3043 Score = 136 bits (150), Expect = 3e-28 Identities = 218/311 (70%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 8467 GAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAATATTTTGTTCCTCTA 8526 || || ||||| ||||| || ||||||| ||||| || || ||| |||| ||||| || Sbjct 1350 GACCTGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTG 1291 Query 8527 TTCCATGGATTAACTATGGCTGATGATCTACAATCTGTTATAAAGAAGATGTTAGAAAAT 8586 ||||| || | |||||||| ||||| || || | | |||| |||| | ||| Sbjct 1290 TTCCAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAAT 1231 Query 8587 TCTCAAGGCCAAGGATCTAATGATTATG--AGTATGTTTCAATAGCAAATCATATTGATT 8644 || | || ||||||| | |||||| || || || || || || || || || | Sbjct 1230 TCAGATGGGCAAGGATGTCCAGATTATTCAAGAAT--TTGCATTGCTAACCACATAGACT 1173 Query 8645 ATGAAAAATGGAATAATCACCAAAGGAAAGAATCAAATTATTATGTTTTCAAAGTAATGG 8704 | ||||||||||| || || ||| |||||||||| || | |||| ||| |||| |||| Sbjct 1172 ACGAAAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGG 1113 Query 8705 GCCAGTGTTTCGGTCTTCCAAACTTATTTACACGAACACATGAATTCTTTGAACAAAGTT 8764 |||||| || ||||| || | || | || ||||| ||||||||| | ||| Sbjct 1112 GCCAGTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTC 1053 Query 8765 TGATTTATTAT 8775 || | |||||| Sbjct 1052 TGGTGTATTAT 1042 >seq22788 Length=2006 Score = 134 bits (148), Expect = 1e-27 Identities = 192/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 8401 ATTGGACTAAAAGCTAAAGAAAGAGAAATGAAACGGATTGGAAGATTCTTCTCTTTAATG 8460 || ||||||| || |||||| |||||||||| |||| ||||||| ||| | |||||| Sbjct 1804 ATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCTTAATG 1745 Query 8461 TCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAATATTTTGTT 8520 |||||| ||||| | ||||| ||||| | || ||||| || || ||| | |||| |||| Sbjct 1744 TCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATTATGTT 1685 Query 8521 CCTCTATTCCATGGATTAACTATGGCTGATGATCTACAATCTGTTATAAAGAAGATGTTA 8580 || ||||| | || |||| |||||||| |||||| || || || |||||| | Sbjct 1684 CCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGATGATG 1625 Query 8581 GAAAATTCTCAAGGCCAAGGATCTAATGATTA----TGAGTATGTTTCAATAGCAAATCA 8636 | |||| | || ||||||| | || || |||| || ||||| || || Sbjct 1624 AACCATTCAGATGGTCAAGGATGTGCAGACTACACCAGAGTCTG----CATAGCGAACCA 1569 Query 8637 TATTGATTATGAAAAATGGAATAATCACCA 8666 ||| ||||| || ||||| || ||||| Sbjct 1568 TATAGATTACACCAAGTGGAACAACCACCA 1539 >seq250369 Length=726 Score = 125 bits (138), Expect = 6e-25 Identities = 203/286 (71%), Gaps = 11/286 (4%) Strand=Plus/Minus Query 8399 TCATTGGACTAAAAGCTAAAGAAAGAGAAATGAAACGGATTGGAAGATTCTTCTCTTTAA 8458 ||||||| | | || ||||| |||| ||||| || | |||||||| ||| || ||| Sbjct 486 TCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAA 427 Query 8459 TGTCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAATATTTTG 8518 |||| ||||| || | | ||| ||||| | || ||||| || ||||| ||| | |||| Sbjct 426 TGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTTG 367 Query 8519 TTCCTCTATTCCATGGATTAACTATGGCTGATGATCT-AC--AATCTGTTATAAAGAAGA 8575 | || |||||| | ||||| || ||||| ||||||| || || |||| | ||| | Sbjct 366 TCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAA---GTTACCAGGAAAA 310 Query 8576 TGTTAGAAAATT-CTC--AAGGCCAAGGATCTAATGATTATGAGTATGTTTCAATAGCAA 8632 || | ||| || ||| | || || || | | ||||| | | | || ||||||| Sbjct 309 TG--AAAAAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAA 252 Query 8633 ATCATATTGATTATGAAAAATGGAATAATCACCAAAGGAAAGAATC 8678 || | || ||||| |||| ||||||||||| ||| |||| || || Sbjct 251 ATTACATCGATTACAAAAAGTGGAATAATCATCAACGGAAGGAGTC 206 >seq110009 Length=642 Score = 109 bits (120), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 8332 CCTGCAACTGATTGGAAATCATTCTTGCAAAAGATAAATGACTTTGGATT---AGATTTG 8388 ||||| || |||||| | ||| || ||| | |||| ||| ||| | |||| Sbjct 311 CCTGCCACAAATTGGAGACAATTTTTACAAGAAGTAAACGACAATGGTCTGCCAGATG-- 368 Query 8389 AAGTCTCTCATCATTGGACTAAAAGCTAAAGAAAGAGAAATGAAACGGATTGGAAGATTC 8448 ||||||| | || ||||| | |||||| | || |||||| |||| ||||||||| Sbjct 369 -AGTCTCTTGTAATAGGACTCCGTGGTAAAGAGCGCGAGATGAAAAGGATAGGAAGATTC 427 Query 8449 TTCTCTTTAATGTCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAG 8508 ||| | ||||||| |||| | |||| ||||||||||| || || | | || || Sbjct 428 TTCGCCCTAATGTCCTGGGCCTTGCGAGAATATTTTGTTTTGACCGAATTATTGATAAAA 487 Query 8509 GAATATTTTGTTCCTCTATTCCATGGATTAACTATGGCTGATGATCT 8555 | | |||||||||| |||| ||||| |||| ||||| |||||||| Sbjct 488 AACTTTTTTGTTCCTTTATTTGATGGACTAACAATGGCCGATGATCT 534 >seq53828 Length=2951 Score = 89.7 bits (98), Expect = 4e-14 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 8837 TGGTGTGTTGGAATGGACAAAAAGGGGGTTTAGAAGGATTAAGACAAAAAGGATGGTCAG 8896 |||| || ||||||||||| || || || | |||||||| ||||||||||| ||| || Sbjct 2562 TGGTTTGCTGGAATGGACAGAAGGGAGGACTGGAAGGATTCAGACAAAAAGGGTGG--AG 2505 Query 8897 TATT--AAATTATTTAGTTATAGAAAGGGAATCTAGGATAAGAAACACAAAGGTTAAAGT 8954 |||| |||||| ||| | ||||| | | || || | ||||| || ||||| || Sbjct 2504 TATTGTAAATTACTTAATATTAGAAGAGTAGTCCTCGAAAGTTAACACGAAAGTTAATGT 2445 Query 8955 ATTAGCACAAGGGGATAATCAA 8976 || || || |||||||||||| Sbjct 2444 TTTGGCTCAGGGGGATAATCAA 2423 >seq36779 Length=13892 Score = 87.8 bits (96), Expect = 2e-13 Identities = 287/449 (64%), Gaps = 34/449 (8%) Strand=Plus/Plus Query 8326 AATAAACCTGCAACTGATTGGAAATCATTCTTGCAAAAGATAAATGACTTTGGATTAGAT 8385 |||| ||| || |||| |||||| ||| ||||| | |||||| ||| || Sbjct 5316 AATAGACCAGCTACTGCGTGGAAAGAGTTCATGCAACGAGTCAATGACCATGGGTTGTCC 5375 Query 8386 TTGAAGTCTCTCATCATTGGACTAAAAGCTAAAGAAAGAGAAATGAAACGGATTGGAAGA 8445 | | ||||| |||||||||| | | ||||| || || |||||| | || | Sbjct 5376 CAGGACTCTCTTGTCATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGG 5435 Query 8446 TTCTTCTCTTTAATGTCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATT 8505 || || | | ||||| ||||| | |||| || || || |||| || || ||||| Sbjct 5436 TTTTTAGCACTTATGTCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATC 5495 Query 8506 AAGGAATATTTTGTTCCTCTATTCCATGGATTAACTATGGCTGATGATCTACAATCTGTT 8565 ||||| | ||||| || |||| | || | |||||||| ||||| || |||| Sbjct 5496 AAGGAGCACTTTGTCCCATTATTTAAGGGTCTGACTATGGCCGATGA-CT-CAAT----- 5548 Query 8566 ATAAAGAAGATGTTAGAAAATTCTCAAGGCCAAGGATCTAATGATTATGAGTATGTTTCA 8625 || || | || ||||| | | || ||| | | | Sbjct 5549 ------------------AACTCCGATGGACAAGGGTGTCCAGACTATACTAAAATCTGT 5590 Query 8626 ATAGCAAATCATATTGATTATGAAAAATGGAATAATCACCAAAGGAAAGAATCAAATTAT 8685 |||| |||||||| || |||||||||||||| || ||| | | || ||| | Sbjct 5591 GTAGCGAATCATATCGACTATGAAAAATGGAACAA---CCATA------ACTCCAATCAA 5641 Query 8686 TATGTTTTCAAAGTAATGGGCCAGTGTTTCGGTCTTCCAAACTTATTTACACGAACACAT 8745 ||||| ||| || |||||||||| ||| ||| || | || || ||| || ||| Sbjct 5642 TATGTATTCCGTGTCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCAT 5701 Query 8746 GAATTCTTTGAACAAAGTTTGATTTATTA 8774 ||||||||||| ||||||| |||||||| Sbjct 5702 GAATTCTTTGAGAAAAGTTTAATTTATTA 5730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41968277776072