Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_013135.1 Length=12390 Score E Sequences producing significant alignments: (Bits) Value seq250369 87.8 1e-13 seq46121 82.4 6e-12 >seq250369 Length=726 Score = 87.8 bits (96), Expect = 1e-13 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 7536 GTGAACGATTCAGGTATACCCATTGAACAGCTTATT-ATAGGATTGATGGCAAAAGAAAG 7594 || || ||| |||| | ||| ||| | |||| | || || |||| | |||||| | Sbjct 520 GTCAATGATGAAGGTCTCCCCGATGA-CTCCTTAGTCATTGGGTTGAGAGGAAAAGAGGG 462 Query 7595 AGAACAGAAAATCGATGGGAGGTTCTTCTCTTTAATGTCTTGGGACATCCGCGACTACTT 7654 ||| ||| | | || || || ||| || ||||||||||||| | || | ||||| Sbjct 461 AGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTAATGTCTTGGGATCTTCGGGTGTACTT 402 Query 7655 TGTCATGACTGAATACCTCATTAAGACCCACTTTGTCCCCTTATTCAAAGGGCTGACCAT 7714 ||| | || || || |||||||| |||||||||||| |||||||||| |||| || Sbjct 401 TGTGCTAACAGAGTATCTCATTAAAGAACACTTTGTCCCCCTATTCAAAGGATTGACAAT 342 Query 7715 GGCAGATGACCTCAC 7729 ||| |||| || || Sbjct 341 GGCCAATGATCTGAC 327 >seq46121 Length=3043 Score = 82.4 bits (90), Expect = 6e-12 Identities = 191/286 (67%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 7647 GACTACTTTGTCATGACTGAATACCTCATTAAGACCCACTTTGTCCCCTTATTCAAAGGG 7706 || || || ||| | ||||||||||| || || || || || || | ||| |||| Sbjct 1341 GAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGC 1282 Query 7707 CTGACCATGGCAGATGACCTCACAACAGTAATTGGCAAGATATTGGAGAACTCTCGGGGT 7766 || || ||||| ||||||||||| || | | ||| | ||| | || || || Sbjct 1281 CTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGATGGG 1222 Query 7767 CAGGGAGAGGCAGACTATG--AGAACTTGACTATCACTGATCACATTGACTATGAAAAAT 7824 || ||| |||| ||| |||| ||| || || | ||||| ||||| ||||||| Sbjct 1221 CAAGGATGTCCAGATTATTCAAGAATTTGC--ATTGCTAACCACATAGACTACGAAAAAT 1164 Query 7825 GGAACAACCACCAGAGAGGGGAAGCCAACAATCCAATCTTCTTGGTCATGGGGAAGTTCT 7884 |||||||||| || | ||| ||||| | | ||||| || ||||| ||||| Sbjct 1163 GGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTCC 1104 Query 7885 TGGGTTACCCGCATCTAATAGAGCGTACACATGAGATATTTGAAAA 7930 || ||||| ||||||| | || ||||| | |||||||| Sbjct 1103 AAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAA 1058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39404439765696