Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_013955.1 Length=15764 Score E Sequences producing significant alignments: (Bits) Value seq263735 107 2e-19 >seq263735 Length=2160 Score = 107 bits (118), Expect = 2e-19 Identities = 274/412 (67%), Gaps = 9/412 (2%) Strand=Plus/Plus Query 10960 AATGACGAAGGTTTGCCCAGGGATTGTCTCGCTATTGGACTCAAAGCAAAAGAAAGAGAA 11019 |||||| | || ||||| || | ||| | ||| |||||| || ||||| | ||| Sbjct 1186 AATGACAATGGCCTGCCCGATGAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAA 1245 Query 11020 GTAAAGTTAGTTGGAAGGtttttttCTTTAATGACATGGGAACTCAGAGAATATTTCGTA 11079 | ||| | | || || |||||| | |||||| |||||| | | || ||||| || Sbjct 1246 ATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTG 1305 Query 11080 TGTACAGAGTATATGATCAAACAGTTCTTCATTCCCCTG-TTTCAAGGCCTGACTATGGC 11138 | || || | | | || ||| | | || |||| | ||| | | || || ||||| Sbjct 1306 TTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGC 1365 Query 11139 TGATGATATGCAAGAGGTCCTTAAAAAATTACTAAGCAGTTCTAGTGGTCAAGGTTT--- 11195 ||||||| | || || ||| || | | | | |||| ||||||||| | Sbjct 1366 TGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCC 1425 Query 11196 AGACAATTACAACTTGATCTCAATTGCCAATCATTTTGATTATGAAAAATGGAATAATCA 11255 ||| ||| | |||| ||||| || || |||||||| ||||||||||||||| Sbjct 1426 AGATTATTCACGC---ATCTGTATTGCTAACCACATTGATTATACAAAATGGAATAATCA 1482 Query 11256 TCAAAGATATGCTTCAAATTGCCATGTGTTTAAAGTCATGGGACAATGTTTTGGTTTACC 11315 || ||| | | || || |||| |||| ||| ||||| |||| |||| | |||| Sbjct 1483 CCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCAAT-TTTTAGGATACC 1541 Query 11316 CAA-TCTGTTCCTGCGTACACATGAATTCTTTGAGAAAAGCTTGATCTATTA 11366 ||| |||| | || || |||||||| ||||| |||||| | || ||||| Sbjct 1542 CAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTATTA 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50158454638216