Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_017685.1 Length=14717 Score E Sequences producing significant alignments: (Bits) Value seq263735 116 3e-22 seq250369 107 2e-19 seq22788 89.7 5e-14 >seq263735 Length=2160 Score = 116 bits (128), Expect = 3e-22 Identities = 373/575 (65%), Gaps = 28/575 (5%) Strand=Plus/Plus Query 9883 GGCAGATTCTTCTCATTAATGTCATATGATATGAGAGATTATTTTGTTATAACGGAGTAT 9942 || ||||| || | |||||||||| | | | || |||||||| | || || | | Sbjct 1258 GGTAGATTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTT 1317 Query 9943 CTGATaaaaaaa-TACTATGTTCCATTATTCAAAGGATTAACAATGGCTGATGACCAAAA 10001 | ||||||||| | | ||| || ||||| | || |||| ||||||||||| | | Sbjct 1318 TTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCAC 1377 Query 10002 TACTGTTGTCaaaaaaaTGTTAAAAGTATCTAAAGGACAGGG----CCTGATTGATTACA 10057 | || || || ||| | || ||| | || || || || |||| | || Sbjct 1378 TGAAGTAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACG 1437 Query 10058 AAGAGATTACGATCGCTAATCATTTGGATTATGAGAAGTGGAATAACTATCAAAGAAAAG 10117 | | || ||||| || | |||||| || |||||||| | || ||||| | Sbjct 1438 CATCTGT----ATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGG 1493 Query 10118 AGTCCAATGGCCCTGTGTTCCGAGTCATGGGTCAATTTTTGGGCTTACCTAATTTAATAG 10177 ||||||| ||| || |||| |||||||||||||| || | || | | | |||| Sbjct 1494 AGTCCAACAAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAG 1553 Query 10178 AAAGAACTCATGAGTTTTTTGAAAAAAGTCTTATTTATTACAATGGGAGGCCTGACTTGA 10237 || | |||||||| |||||||||||||| |||||||||||| | | || || || | Sbjct 1554 AACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAA 1613 Query 10238 TGACAGTGCGTGGTAA-AGAAGTGATCTC----AAATAA------AGGGGAAGTTGTTTG 10286 || || |||| ||| | || | | ||| || || | | || || Sbjct 1614 TG-------GTCGTAAGAGACG-GAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTG 1665 Query 10287 TTGGGAGGGTCAAAAAGGAGGCTTAGAAGGATTGAGACAAAAAGGGTGGAGTGTTCTCAA 10346 |||| |||| || ||||| || | || ||| | ||||| ||||| ||||| || | || Sbjct 1666 TTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAA 1725 Query 10347 TTGCCTAATGATCGAACGGGAATCAAAGATACGAAATACTCAAATAGGACTCTTGGCCCA 10406 || | || | ||| || | | | |||||| || || | || ||||| Sbjct 1726 TTATTTGATTCTAGAAGAAGAGGCCTCAAGAGTAAATACCAAAGTAAATGTTTTAGCCCA 1785 Query 10407 AGGAGACAATCAAGTAATTACTACTCACTATAAGA 10441 |||||| ||||| || ||| |||||| ||||||| Sbjct 1786 AGGAGATAATCAGGTTATTTGTACTCATTATAAGA 1820 >seq250369 Length=726 Score = 107 bits (118), Expect = 2e-19 Identities = 255/382 (67%), Gaps = 24/382 (6%) Strand=Plus/Minus Query 9838 TTAGTAATAGGGTTGAAGGCTAAAGAAAGAGAATTAAAAATTGATGGCAGATTCTTCTCA 9897 ||||| || ||||||| | ||||| |||| | || | | || ||||| ||| | Sbjct 490 TTAGTCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCT 431 Query 9898 TTAATGTCATATGATATGAGAGATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTAC 9957 ||||||| | ||| | | | || ||||| |||| |||||||| || ||| || || Sbjct 430 CTAATGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACAC 371 Query 9958 TATGTTCCATTATTCAAAGGATTAACAATGGCTGATGACCAAAATACTGTTGTCaaaaaa 10017 | ||| || ||||||||||||| |||||||| |||| | | ||| || ||| Sbjct 370 TTTGTCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAA 311 Query 10018 aTGTTAAAAGTATCTAAAGGACAGGGCCTGATT-----GATTACAAAGAGATTACGATCG 10072 ||| |||||| || |||| |||| | || |||||| |||| | || | Sbjct 310 ATG-AAAAAGTTACT--CGGAC-GGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAG 255 Query 10073 CTAATCATTTGGATTATGAGAAGTGGAATAACTATCAAAGAAAAGAGTCCAATGGCCCTG 10132 | ||| | | ||||| | ||||||||||| ||||| | || ||||| Sbjct 254 CAAATTACATCGATTACAAAAAGTGGAATAATCATCAACGGAAGGAGTC----------- 206 Query 10133 TGTTCCGAGTCATGGGTCAATTTTTGGGCTTACCTAATTTAATAGAAAGAACTCATGAGT 10192 | | || |||||||||||||| ||||||| |||| | || | | |||||||||| Sbjct 205 TTTACC--GTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGT 148 Query 10193 TTTTTGAAAAAAGTCTTATTTA 10214 | |||| | |||||| || || Sbjct 147 TCTTTG--AGAAGTCTCATCTA 128 >seq22788 Length=2006 Score = 89.7 bits (98), Expect = 5e-14 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 9859 AAAGAAAGAGAATTAAAAATTGAT-GGCAGATTCTTCTCATTAATGTCATATGATATGAG 9917 |||||| ||||| | || | ||| || |||| ||| | |||||||||| | | | Sbjct 1789 AAAGAACGAGAAATGAAGAG-GATCGGAAGATATTTCGCCTTAATGTCATGGAAACTCCG 1731 Query 9918 AGATTATTTTGTTATAACGGAGTATCTGATaaaaaaaTACTATGTTCCATTATTCAAAGG 9977 || || ||||| || || ||||||||||| || || || |||||||| |||||||| || Sbjct 1730 TGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATTATGTTCCGTTATTCAAGGG 1671 Query 9978 ATTAACAATGGCTGATGA 9995 ||||||||||||| || Sbjct 1670 GCTAACAATGGCTGACGA 1653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46819235333440