Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_017714.1 Length=15867 Score E Sequences producing significant alignments: (Bits) Value seq263735 122 9e-24 seq250369 93.3 4e-15 seq122679 84.2 2e-12 seq36779 80.6 3e-11 seq42553 78.8 9e-11 >seq263735 Length=2160 Score = 122 bits (134), Expect = 9e-24 Identities = 244/355 (69%), Gaps = 5/355 (1%) Strand=Plus/Plus Query 11042 GGGAATTGAAGGATGCAGGTAGATTCTTTTCATTGATGAGTTGGGAGTTAAGAGAGTATT 11101 ||||| ||||| ||||||||| ||| | || ||| |||| ||| | ||||||| Sbjct 1241 GGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATT 1300 Query 11102 TTGTATTCACAGAGTATTTGATTAAAGAAC-ATTTTGTGCCATTATTCAAAGGATTAACT 11160 |||| || || || | ||| || ||| ||| |||||| || ||||| | || |||| Sbjct 1301 TTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACC 1360 Query 11161 ATGGCAGATGATCT-ACAAACTGTAATTAAAAAGATGATTGATGTATCAGCAGGACAAGG 11219 ||||| |||||||| || | |||| ||| |||||||| || || | || ||||| Sbjct 1361 ATGGCTGATGATCTCACTGA-AGTAACTAAGAAGATGATGAATAATTCTGATGGTCAAGG 1419 Query 11220 -TACTGAAACCTATGAAAACATAACAATAGCGAATAATATTGACTATGAGAAGTGGAATA 11278 | | | | ||| | ||| || || || | ||||| ||| || ||||||| Sbjct 1420 ATGCCCAGA-TTATTCACGCATCTGTATTGCTAACCACATTGATTATACAAAATGGAATA 1478 Query 11279 ATTATCAAAGATATGATTCAAATAGTGCAATTTTCACTGTCATGGGACAATTTTTAGGGT 11338 || | || ||| | || || || | | || | || ||||| ||||||||||| | Sbjct 1479 ATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGAT 1538 Query 11339 ATCCAAAGTTAATAGCAAGAACTCATGAGTTTTTTGAGAAAAGCCTGATCTACTA 11393 | |||| | |||| | | |||||||| |||||||| |||||||| || || || Sbjct 1539 ACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTATTA 1593 >seq250369 Length=726 Score = 93.3 bits (102), Expect = 4e-15 Identities = 254/384 (66%), Gaps = 24/384 (6%) Strand=Plus/Minus Query 11014 TTGGTAATTGGGTTAAAAGCAAAGGAAAGGGAATTGAAGGATGCAGGTAGATTCTTTTCA 11073 || || |||||||| | || ||| || | || ||||| | || ||||| || | Sbjct 490 TTAGTCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCT 431 Query 11074 TTGATGAGTTGGGAGTTAAGAGAGTATTTTGTATTCACAGAGTATTTGATTAAAGAACAT 11133 | ||| |||||| | | | ||| ||||| | ||||||||| | ||||||||||| Sbjct 430 CTAATGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACAC 371 Query 11134 TTTGTGCCATTATTCAAAGGATTAACTATGGCAGATGATCT-ACAAACTGTAATTAAAAA 11192 ||||| || ||||||||||||| || ||||| ||||||| || | || | | || Sbjct 370 TTTGTCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGA-AGTTACCAGGAA 312 Query 11193 GATGATTGATGTA-TCAGCAGGACAAGGTACTGAAACCTATGA---AAACATAACAATAG 11248 |||| | || || | || || ||| || || || | || || | |||| Sbjct 311 AATGAAAAAGTTACTCGGACGGGCAGGGT--TG-TCCCGATTACTCGAAGATCTCTATAG 255 Query 11249 CGAATAATATTGACTATGAGAAGTGGAATAATTATCAAAGATATGATTCAAATAGTGCAA 11308 | ||| | || || || | |||||||||||| ||||| | | || || Sbjct 254 CAAATTACATCGATTACAAAAAGTGGAATAATCATCAACGGAAGGAGTC----------- 206 Query 11309 TTTTCACTGTCATGGGACAATTTTTAGGGTATCCAAAGTTAATAGCAAGAACTCATGAGT 11368 || || |||||||| ||||| || || || || | | || || | |||||||||| Sbjct 205 --TTTACCGTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGT 148 Query 11369 TTTTTGAGAAAAGCCTGATCTACT 11392 | |||||| ||| || ||||||| Sbjct 147 TCTTTGAG--AAGTCTCATCTACT 126 >seq122679 Length=1484 Score = 84.2 bits (92), Expect = 2e-12 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11259 TGACTATGAGAAGTGGAATAATTATCAAAGATATGATTCAAATAGTGCAATTTTCACTGT 11318 ||||||| |||||||| || | ||| | | || || |||| ||| |||||| Sbjct 777 TGACTATACCAAGTGGAACAACCACCAACGCAAGGAGTCTAATAAGTATGTTTACACTGT 836 Query 11319 CATGGGACAATTTTTAGGGTATCCAAAGTTAATAGCAAGAACTCATGAGTTTTTTGAGAA 11378 |||||||| ||||||||| ||||| || || || |||| |||||||||||| |||| Sbjct 837 CATGGGACGATTTTTAGGATATCCCAAAGGCATCGCTCGAACCCATGAGTTTTTTTAGAA 896 Query 11379 AAGCCTGATCTACTAT 11394 ||| || || || ||| Sbjct 897 AAGTCTCATATATTAT 912 >seq36779 Length=13892 Score = 80.6 bits (88), Expect = 3e-11 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 12082 TATCTGGATCCTTCAATAGGAGGAGTTGGGGGAACATCATTAACAAGGTTTTTGATAAGG 12141 ||||| || || || | ||||| | | || || || || || ||| |||||||||| Sbjct 6419 TATCTTGACCCATCCTTGGGAGGCATCTGCGGGACCTCGTTGACCCGGTATTTGATAAGG 6478 Query 12142 ATGTTTCCAGACCCAATTACTGAGTCATTATCCTTTTGGAAA 12183 ||||||||||||||| | ||||||||| | ||||| |||||| Sbjct 6479 ATGTTTCCAGACCCAGTCACTGAGTCACTCTCCTTCTGGAAA 6520 >seq42553 Length=2057 Score = 78.8 bits (86), Expect = 9e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 11059 GGTAGATTCTTTTCATTGATGAGTTGGGAGTTAAGAGAGTATTTTGTATTCACAGAGTAT 11118 || ||||| ||| | | ||| ||||| | ||||||| ||||| |||||||||| Sbjct 578 GGAAGATTTTTTGCTCTCATGTCCTGGGATCTTCGAGAGTACTTTGTCCTCACAGAGTAC 519 Query 11119 TTGATTAAAGAACATTTTGTGCCATTATTCAAAGGATTAACTATGGCAGATGATCT 11174 | || ||||| || || || || || |||||||||||||| ||||| || ||||| Sbjct 518 CTCATCAAAGAGCACTTCGTCCCCTTGTTCAAAGGATTAACAATGGCCGACGATCT 463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50486954722640