Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020803.1 Length=11487 Score E Sequences producing significant alignments: (Bits) Value seq263735 192 4e-45 seq46121 129 4e-26 seq250369 100 2e-17 seq22788 84.2 2e-12 seq53828 82.4 6e-12 seq110009 78.8 7e-11 >seq263735 Length=2160 Score = 192 bits (212), Expect = 4e-45 Identities = 458/679 (67%), Gaps = 30/679 (4%) Strand=Plus/Plus Query 6574 CCAGCGACCAATTGGCCAGAATTTTTGTCAAG-GATTGAGGAAGATGGACTACCCAAAGA 6632 || || || |||||| | |||||||| || | | || | || |||| || ||| | || Sbjct 1150 CCTGCTACAAATTGGAAACAATTTTTG-CAGGAGGTTAATGACAATGGCCTGCCCGATGA 1208 Query 6633 GTCTCTGATCATAGGCTTAAAAGGGAAAGAACGTGAATTAAAAAAGGCAGGACGGTTCTT 6692 |||||| | ||||| | ||| ||||| || ||| | || | ||| | || || Sbjct 1209 GTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTT 1268 Query 6693 CTCTCTGATGTCATGGGAATTGAGAGAATATTTTGTAATAACAGAATACTTAATCAAGAC 6752 | | |||||||||| || | || |||||||| | || |||| ||||| || | Sbjct 1269 TACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAA 1328 Query 6753 ACACTAT-GTGCCCTTATTCAAAGGGTTAACCATGGCAGATGATATGACGGAAGTTGTAA 6811 || | | || || ||||| | | |||||||||| |||||| | || ||||| | Sbjct 1329 ACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTA 1388 Query 6812 AGAAAATGCTAGAAAGGAGTCAAGGGCAGGGAGA---AGATGACT-ACGAGCACATCAGC 6867 |||| ||| | | | | | || || ||| |||| | | ||| |||| | Sbjct 1389 AGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACG----CATCTGT 1444 Query 6868 ATTGCCAACCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAAGGAATCAAATGGG 6927 ||||| ||||||||||| ||| || ||||||||||| ||||||||||| || || | Sbjct 1445 ATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAG 1504 Query 6928 CCTGTGTTCAGAGTCATGGGACAATTCCTAGGATATCCCAGTTTGATCGAAAAAACTCAT 6987 ||| || ||||| ||||| ||||| ||||||| || ||| |||| ||| |||||| Sbjct 1505 TATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCAT 1564 Query 6988 GACTTTTTTCAAGACAGCTTGATTTATTACAATGGGAGACCAGACCTGATGGAAGT--GA 7045 || |||||| || | ||| | ||||||||| | | || || | |||| || || Sbjct 1565 GAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGA 1624 Query 7046 GGGGGAA---TGAATTATTGAACAAAA---CAGACAAGCTTGTCTGTTGGGATGGTCAGG 7099 | |||| || | ||||||| |||| || | || |||||| | || ||| Sbjct 1625 GACGGAACCCTGCA-----AAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGA 1679 Query 7100 CTGGAGGACTGGAAGGACTGAGACAAAAGGGATGGAGCATATTGAATCTACTTGTGATTC 7159 || || ||||| ||||| ||||| || ||||||||||| | ||| || | |||||| Sbjct 1680 AAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAAT-TA--TTTGATTC 1736 Query 7160 -AGA--GAGAGTCCAAAATCAGAAACACCAAAGTGCAAACATTGGCTCAGGGAGACAATC 7216 ||| |||| || || ||| |||||||| | || || || ||||| |||| Sbjct 1737 TAGAAGAAGAGGCCTCAAGAGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATC 1796 Query 7217 AAGTTGTTTGCACCCAATA 7235 | ||| |||| || || || Sbjct 1797 AGGTTATTTGTACTCATTA 1815 >seq46121 Length=3043 Score = 129 bits (142), Expect = 4e-26 Identities = 361/542 (67%), Gaps = 24/542 (4%) Strand=Plus/Minus Query 6604 AGGATTGAGGAAGATGGACTACCCAAAGAGTCTCTGATCATAGGCTTAAAAGGGAAAGAA 6663 |||||| | || || ||||| || |||| ||||| |||| || || | | ||||| Sbjct 1449 AGGATTAATGACGAGGGACTTCCTGAAGACTCTCTAGTCATCGGATTGAGGAGAAAAGAG 1390 Query 6664 CGTGAATTAAAAAAGGCAGGACGGTTCTTCTCTCTGATGTCATGGGAATTGAGAGAATAT 6723 || || || || || || ||| || | | || | ||||| | ||||||||||| Sbjct 1389 CGGGACTTGAA----GCGGGTCGGGCGTTTTTTTTGCTCTCATG--ACCTGAGAGAATAT 1336 Query 6724 TTTGTAATAACAGAATACTTAATCAAGACACACTATGTGCCCTTATTCAAAGGGTTAACC 6783 || || | || |||||| ||||||| ||| | || || | ||| |||| | || Sbjct 1335 TTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGCCTCACT 1276 Query 6784 ATGGCAGATGATATGACGGAAGTTGTAAAGAAAATGCTAGAAAGGAGTCAA--GGGCAGG 6841 ||||| ||||| | || || || | ||| || | | | | ||| ||||| | Sbjct 1275 ATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATA--ATTCAGATGGGCAAG 1218 Query 6842 GAGA---AGATGACTACGAGCACATCAGCATTGCCAACCACATTGACTATGAGAAGTGGA 6898 || |||| | | | || | | ||||||| |||||||| ||||| || || |||| Sbjct 1217 GATGTCCAGATTATT-CAAGAATTT--GCATTGCTAACCACATAGACTACGAAAAATGGA 1161 Query 6899 ATAATCATCAGAGAAAGGAATCAAATGGGCCTGTGTTCAGAGTCATGGGACAATTCCTAG 6958 | || ||||| | || ||||| || | ||| ||| ||| ||||| || |||| || Sbjct 1160 ACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTCCAAG 1101 Query 6959 GATATCCCAGTTTGATCGAAAAAACTCATGACTTTTTTCAAGACAGCTTGATTTATTACA 7018 |||| || | | | ||| | ||||||||||| ||| || | || || | ||||| Sbjct 1100 GATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTATTATG 1041 Query 7019 ATGGGAGACCAGACCTGATG--GAAGTGAG-GGGGAATGAATTATTGAACAA-AACAGAC 7074 ||| | ||||||| | ||| | ||| |||| | ||| | || || | |||| Sbjct 1040 TTGGAATACCAGACTTAATGCTCCAACGAGATGGGACT---TTAATCAATAAGGAAAGAC 984 Query 7075 AAGCTTGTCTGTTGGGATGGTCAGGCTGGAGGACTGGAAGGACTGAGACAAAAGGGATGG 7134 | | ||||||| ||| | || || | |||| |||||||| || || ||||||| ||| Sbjct 983 ACG-TTGTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAAGGGCTGG 925 Query 7135 AG 7136 || Sbjct 924 AG 923 >seq250369 Length=726 Score = 100 bits (110), Expect = 2e-17 Identities = 213/312 (68%), Gaps = 7/312 (2%) Strand=Plus/Minus Query 6613 GAAGATGGACTACCCAAAGAGTCTCTGATCATAGGCTTAAAAGGGAAAGAACGTGAATTA 6672 || || || || ||| | || || | |||| || || | ||| ||||| | || | Sbjct 514 GATGAAGGTCTCCCCGATGACTCCTTAGTCATTGGGTTGAGAGGAAAAGAGGGAGAGATG 455 Query 6673 AAAAAGGCAGGACGGTTCTTCTCTCTGATGTCATGGGAATTGAGAGAATATTTTGTAATA 6732 || | || ||| | || ||| |||| ||||| ||||| | | | || ||||| || Sbjct 454 AAGAGGGTCGGAAGATTTTTCGCTCTAATGTCTTGGGATCTTCGGGTGTACTTTGTGCTA 395 Query 6733 ACAGAATA-CTTAATCAAGACACACTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGA 6791 ||||| || || | | |||| ||||| ||| ||| |||||||||| || || ||||| | Sbjct 394 ACAGAGTATCTCATTAAAGA-ACACTTTGTCCCCCTATTCAAAGGATTGACAATGGCCAA 336 Query 6792 TGATATGACGGAAGTTGTAAAGAAAATGCTAGAAAGG-AGTC--AAGGGCAGGGAGAAGA 6848 |||| |||| |||||| | ||||||| | |||| | || | |||||||| Sbjct 335 TGATCTGACCGAAGTTACCAGGAAAATG--AAAAAGTTACTCGGACGGGCAGGGTTGTCC 278 Query 6849 TGACTACGAGCACATCAGCATTGCCAACCACATTGACTATGAGAAGTGGAATAATCATCA 6908 || ||| | | ||| || || || |||| || || | ||||||||||||||||| Sbjct 277 CGATTACTCGAAGATCTCTATAGCAAATTACATCGATTACAAAAAGTGGAATAATCATCA 218 Query 6909 GAGAAAGGAATC 6920 | ||||| || Sbjct 217 ACGGAAGGAGTC 206 >seq22788 Length=2006 Score = 84.2 bits (92), Expect = 2e-12 Identities = 179/263 (68%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 6650 TAAAAGGGAAAGAACGTGAATTAAAAAAGGCAGGACGGTTCTTCTCTCTGATGTCATGGG 6709 ||| |||||||||||| ||| | || | | ||| | | ||| | | ||||||||| Sbjct 1797 TAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCCTTAATGTCATGGA 1738 Query 6710 AATTGAGAGAATATTTTGTAATAACAGAATACTTAATCAAGACACACTATGTGCCCTTAT 6769 || | | || || ||||| || ||||| || | ||||||| | ||||| || |||| Sbjct 1737 AACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATTATGTTCCGTTAT 1678 Query 6770 TCAAAGGGTTAACCATGGCAGATGATATGACGGAAGTTGTAAAGAAAATGCTAGAAAGGA 6829 |||| ||| |||| ||||| || ||| | || || || | || || ||| | || | Sbjct 1677 TCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGATG--ATGAACCA 1620 Query 6830 GTC--AAGGGCAGGGAGAAGATGACTACGAGCACA-TCAGCATTGCCAACCACATTGACT 6886 || | || || ||| | |||||| | || | || |||| || ||||| || || | Sbjct 1619 TTCAGATGGTCAAGGATGTGCAGACTAC-ACCAGAGTCTGCATAGCGAACCATATAGATT 1561 Query 6887 ATGAGAAGTGGAATAATCATCAG 6909 | |||||||| || || ||| Sbjct 1560 ACACCAAGTGGAACAACCACCAG 1538 >seq53828 Length=2951 Score = 82.4 bits (90), Expect = 6e-12 Identities = 119/164 (73%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 7081 GTCTGTTGGGATGGTCAGGCTGGAGGACTGGAAGGACTGAGACAAAAGGGATGGAGCATA 7140 || || ||| |||| ||| ||||||||||||||| | |||||||| || ||||| || Sbjct 2560 GTTTGCTGGAATGGACAGAAGGGAGGACTGGAAGGATTCAGACAAAAAGGGTGGAGTATT 2501 Query 7141 TTGAATCTACTTGTGATTCAGAGAG-AGTCC---AAAATCAGAAACACCAAAGTGCAAAC 7196 | ||| ||||| ||| |||| ||||| ||| | ||||| ||||| | Sbjct 2500 GTAAAT-TACTTAATATTAGAAGAGTAGTCCTCGAAAGT---TAACACGAAAGTTAATGT 2445 Query 7197 ATTGGCTCAGGGAGACAATCAAGTTGTTTGCACCCAATACAGAG 7240 ||||||||||| || |||||||| | |||||||| |||| || Sbjct 2444 TTTGGCTCAGGGGGATAATCAAGTCATCTGCACCCATTACAAAG 2401 Score = 78.8 bits (86), Expect = 7e-11 Identities = 269/410 (66%), Gaps = 12/410 (3%) Strand=Plus/Minus Query 8555 TTCCCGCCTACTTGGGATCAAAAACATCAGAGACTACAAGCATCCTGCAACCATGGGAAA 8614 |||| || || ||||||||| ||||||||||| || | || ||||||||||||||| Sbjct 1120 TTCCAGCTTATCTGGGATCAAGAACATCAGAGAGAACCAATATAATGCAACCATGGGAAA 1061 Query 8615 AGGAGACCAAAATTCCAGTGATCAAGAGAGCGGCAAAATTGAGAGCAGCCATCACATGGT 8674 || | || || |||| | ||| ||||| | | | | |||| |||| | ||| Sbjct 1060 AGTACACAAATGTTCCGCTTATCGCAAGAGCCACCAGACTAAGAGATTCCATATCCGGGT 1001 Query 8675 TCGTAGAACCAGAATCAGATCTATCCAACAGCATATTGAACAACATCAGCAG--CCTCAC 8732 || | || || || || | | |||||||| || || ||| ||| || || Sbjct 1000 TCATTGACATCGACTCGAATTTGGCTAACAGCATTATGGACCTGATC--CAGTCACTGAC 943 Query 8733 AGGAGAGGATTGGTCTGGATCTAT-ACAAGGCTTTAAAAGAACAGGATCTGCACTCCACA 8791 ||| ||||| ||| | | || || | ||| ||||||||||| || || || || | Sbjct 942 AGGTGAGGACTGGAAAGAAGACATCACCA-ACTTCAAAAGAACAGGGTCAGCCCTTCATA 884 Query 8792 GATTCACAAGTGCTCGTGTGAGTGCGGGAGGATTTGCTGCCCAAAGCCCAGCTAGGCTGA 8851 |||| || ||| || || | ||||| | | ||||||| || || | | || Sbjct 883 GATTTTCATCTGCACGGATGTCATCAGGAGGGTACACAGCCCAAAATCCCGCGAAGTTGT 824 Query 8852 CCAGAATGATGGCAACAACAGATA-CAT-TCAGAGAAATAGGGA-GTGATAACTATGACT 8908 || | |||| || || |||| || ||||| | |||| | | || ||||| | Sbjct 823 CCTGGATGACCAGCACTACGGATATTATGGCAGAG---TTGGGAGGAGTAAATTATGATT 767 Query 8909 TCATGTTTCAGTCATTGCTGCTTTACTCTCAGATGACAGCAGGAGAACTG 8958 |||||||||| ||| || ||| | | || || ||| | |||||| || Sbjct 766 TCATGTTTCAAGCATGTCTCTTTTTCGCACAAATCACATCGGGAGAAGTG 717 >seq110009 Length=642 Score = 78.8 bits (86), Expect = 7e-11 Identities = 167/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 6574 CCAGCGACCAATTGGCCAGAATTTTTGTCAAGGATTGAG-GAAGATGGACTACCCAAAGA 6632 || || || |||||| | ||||||| |||| | | | || |||| || || | || Sbjct 311 CCTGCCACAAATTGGAGACAATTTTTA-CAAGAAGTAAACGACAATGGTCTGCCAGATGA 369 Query 6633 GTCTCTGATCATAGGCTTAAAAGGGAAAGAACGTGAATTAAAAAAGGCAGGACGGTTCTT 6692 |||||| | ||||| | || ||||| || || | |||| | |||| | ||||| Sbjct 370 GTCTCTTGTAATAGGACTCCGTGGTAAAGAGCGCGAGATGAAAAGGATAGGAAGATTCTT 429 Query 6693 CTCTCTGATGTCATGGGAATTGAGAGAATATTTTGTAATAACAGAATACTTAATCAAGAC 6752 | | || ||||| |||| ||| ||||||||||||| | || |||| || || || | Sbjct 430 CGCCCTAATGTCCTGGGCCTTGCGAGAATATTTTGTTTTGACCGAATTATTGATAAAAAA 489 Query 6753 ACACTATGTGCCCTTATTCAAAGGGTTAACCATGGCAGATGATATGACGGAAGTTGTAAA 6812 | ||| || ||||| | || |||| ||||| |||||| | || || || || Sbjct 490 CTTTTTTGTTCCTTTATTTGATGGACTAACAATGGCCGATGATCTTACTGAGGTCACGAA 549 Query 6813 GAAAATG 6819 ||| ||| Sbjct 550 GAAGATG 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36524222094624