Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020804.1 Length=13298 Score E Sequences producing significant alignments: (Bits) Value seq263735 167 2e-37 >seq263735 Length=2160 Score = 167 bits (184), Expect = 2e-37 Identities = 273/387 (71%), Gaps = 11/387 (3%) Strand=Plus/Plus Query 8376 TCTTGTTATAGGATTAAAACCCAAAGAGAGAGAAATGAAAAGAACTGGTCGttttttttC 8435 ||| ||||||||| | | |||||| | |||||||| |||| ||| | |||||| | Sbjct 1212 TCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTAC 1271 Query 8436 ATTGATGACATGGAACTTACGGAATTATTTTGTCATGACTGAGTTATTAATTAAAGAACA 8495 || ||| ||||| |||||| | |||||||| |||| || || ||||| ||| ||| Sbjct 1272 CTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACT 1331 Query 8496 CTTCATAGGAC---TATTCAACGGTTTAACCATGGCTGATGA-CTTACAAGGATTAATTA 8551 || | | | |||| | | |||||||||||||||| || || | | ||| || Sbjct 1332 TTT--TTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACT-GAAGTAACTA 1388 Query 8552 AGAAGTTGTTGGATAGAACTACTGGGCAAGGTGATTCAAAAATTAAAAAG--ATAAACAT 8609 ||||| || || ||| || ||| ||||| || | | |||| | || || Sbjct 1389 AGAAGATGATGAATAATTCTGATGGTCAAGG--ATGCCCAGATTATTCACGCATCTGTAT 1446 Query 8610 TGCAAACGGCTTAGATTACACGAAATGGAATAATTACCAGAGATATGATTCCAACAGATA 8669 ||| ||| | | ||||| || |||||||||||| |||||||| | || ||||||| || Sbjct 1447 TGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTA 1506 Query 8670 TGTGTTTAGAGTAATGGGTCAATTTTTGGGGTACGATATGTTAATAGAGAGGACTCATCA 8729 ||| |||||||| |||||||||||||| || ||| | | ||||| |||||||| | Sbjct 1507 TGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGA 1566 Query 8730 GTTTTTCGAACAGTCGCTCATTTATTA 8756 ||||| ||| | || |||||||| Sbjct 1567 ATTTTTTGAAAAAAGCCTTATTTATTA 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 42293588539288