Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020805.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq263735 196 3e-46 seq22788 158 9e-35 seq36779 143 2e-30 seq46121 109 4e-20 >seq263735 Length=2160 Score = 196 bits (216), Expect = 3e-46 Identities = 417/618 (67%), Gaps = 6/618 (1%) Strand=Plus/Plus Query 6290 GATGAGGATTTGGTGATCGGATTAAAAGGAAAAGAAAGAGAACTGAAGATTGCAGGTAGA 6349 |||||| | | || || ||| | ||| ||||| | ||| |||||| ||||||| Sbjct 1204 GATGAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGA 1263 Query 6350 TTTTTCTCATTGATGTCTTGGAAGCTTAGG-GAATACTTTGTTGTCACAGAGTATTTGAT 6408 ||||| | || ||||| ||| |||| | || || ||||| | || || | ||| || Sbjct 1264 TTTTTTACCTTAATGTCATGGGC-CTTACGTGAGTATTTTGTGTTGACCGAATTTTTAAT 1322 Query 6409 CAAGACTCACTTT-GTGCCATTGTTCCATGGGCTGACCATGGCTGATGATATGACAGCAG 6467 || | | ||| || || || || || | || ||||||||||||||| | || | || Sbjct 1323 AAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAG 1382 Query 6468 TGATCAAAAAGATGCTGGAAAGCTCGTCTGGTCAAGGGCTAACAAACTACGACAGCGTTT 6527 | | || |||||| || | | || ||||||||| || | || || | | Sbjct 1383 TAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCT 1442 Query 6528 GTATTGCAAATCATATTGACTATGAAAAATGGAATAATCATCAACGAAAATTGTCCAATG 6587 ||||||| || || ||||| ||| ||||||||||||||| || |||| |||||| Sbjct 1443 GTATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACA 1502 Query 6588 GACCTGTGTTTAAAGTCATGGGACAATTCTTGGGTTATCCAAATTTGATATACCGGACAC 6647 ||| |||| ||| ||||| ||||| || || || |||| | ||||| | ||||| | Sbjct 1503 AGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTC 1562 Query 6648 ATGAGTTTTTTGAGAAAAGTTTAATTTACTATAATGAAAGACCGGATCTCATGAAAGTCA 6707 |||| |||||||| ||||| | ||||| || | | |||||| | ||| || | Sbjct 1563 ATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAA 1622 Query 6708 GAAATGGGATCTT---AGAAAATAGCACACATCAGAGGGTTTGCTGGAATGGACAGGCAG 6764 || | || | | | | | || | | || | |||| || || ||||| || ||| || Sbjct 1623 GAGACGGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAG 1682 Query 6765 GTGGTTTAGAAGGTTTGAGACAGAAAGGATGGAGTATTCTTAATTTGCTGGTCATACAGA 6824 |||| | || || | ||||||||||||||||| ||| | |||| || | || | Sbjct 1683 GTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAG 1742 Query 6825 GAGAAGCGAAAATCCGGAATACCGCAGTTAAAGTGCTAGCACAAGGCGACAATCAAGTCA 6884 ||| || || |||||| ||| || || |||| ||||| || ||||| || | Sbjct 1743 AAGAGGCCTCAAGAGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTA 1802 Query 6885 TATGTACACAGTACAAGA 6902 | ||||| || || |||| Sbjct 1803 TTTGTACTCATTATAAGA 1820 >seq22788 Length=2006 Score = 158 bits (174), Expect = 9e-35 Identities = 243/347 (70%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 6227 ATCGACAAACCAGCGACAAATTGGCTTGAGTTTCTTGAAGAGATCGACAAAAATGGATTA 6286 ||||| | | ||| || |||||| ||||| ||| |||| ||| | | || || ||| Sbjct 1882 ATCGAGACGCAAGCTACGAATTGGAAGGAGTTCCTTCAAGACATCAATGACAACGGCTTA 1823 Query 6287 TCTGATGAGGATTTGGTGATCGGATTAAAAGGAAAAGAAAGAGAACTGAAGATTGCAGGT 6346 || | | ||||| |||||| ||| ||| |||||| ||||| |||||| || Sbjct 1822 GACGAAAATTACTTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGA 1763 Query 6347 AGATTTTTCTCATTGATGTCTTGGAAGCTTAGGGAATACTTTGTTGTCACAGAGTATTTG 6406 |||| |||| | || ||||| ||||| || | || |||||||| ||||||||||| || Sbjct 1762 AGATATTTCGCCTTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTG 1703 Query 6407 ATCAAGACTCACTTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGATATGACAGCA 6466 ||||||| | | ||| || || ||| | ||||| || |||||||| ||| | || | Sbjct 1702 ATCAAGAAGTATTATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAG 1643 Query 6467 GTGATCAAAAAGATGCTGGAAAGCTCGTCTGGTCAAGGGCTAACAAACTACGACAGCGTT 6526 ||||| ||||||||| || | || ||||||||| || ||||| ||| || Sbjct 1642 GTGATGAAAAAGATGATGAACCATTCAGATGGTCAAGGATGTGCAGACTACACCAGAGTC 1583 Query 6527 TGTATTGCAAATCATATTGACTATGAAAAATGGAATAATCATCAACG 6573 || || || || ||||| || || || ||||| || || || || Sbjct 1582 TGCATAGCGAACCATATAGATTACACCAAGTGGAACAACCACCAGCG 1536 >seq36779 Length=13892 Score = 143 bits (158), Expect = 2e-30 Identities = 386/592 (65%), Gaps = 50/592 (8%) Strand=Plus/Plus Query 6317 GGAAAAGAAAGAGAACTGAAGATTGCAGGTAGATTTTTCTCATTGATGTCTTGGAAGCTT 6376 || ||||| || || |||| | || ||| | ||||| || | ||||| ||| || | Sbjct 5403 GGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTATGTCCTGGGAGTTG 5462 Query 6377 AGGGAATACTTTGTTGTCACAGAGTATTTGATCAAGACTCACTTTGTGCCATTGTTCCAT 6436 | |||||||| || | ||||| ||| | |||||| |||||||| ||||| || | Sbjct 5463 CGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTGTCCCATTATTTAAG 5522 Query 6437 GGGCTGACCATGGCTGATGATATGACAGCAGTGATCAAAAAGATGCTGGAAAGCTCGTCT 6496 || ||||| ||||| ||||| |||| || ||| | Sbjct 5523 GGTCTGACTATGGCCGATGAC-------------TCAATAA------------CTCCGAT 5557 Query 6497 GGTCAAGGGCTAACAAACTACGACAGCGTTTGTATTGCAAATCATATTGACTATGAAAAA 6556 || |||||| || |||| | | ||| | || |||||||| |||||||||||| Sbjct 5558 GGACAAGGGTGTCCAGACTATACTAAAATCTGTGTAGCGAATCATATCGACTATGAAAAA 5617 Query 6557 TGGAATAATCATCAACGAAAATTGTCCAATGGACCTGTGTTTAAAGTCATGGGACAATTC 6616 ||||| || ||| ||| |||||| | ||| || |||||||| || || Sbjct 5618 TGGAACAACCAT-AAC--------TCCAATCAATATGTATTCCGTGTCATGGGCCAGTTT 5668 Query 6617 TTGGGTTATCCAAATTTGATATACCGGACACATGAGTTTTTTGAGAAAAGTTTAATTTAC 6676 |||||||| || || | || | ||||| ||||| || |||||||||||||||||||| Sbjct 5669 TTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGAGAAAAGTTTAATTTAT 5728 Query 6677 TATAATGAAAGACCGGATCTCATGAAAGTCAGAAATGGGATCTTAGAAAATAGCACACAT 6736 || | | || ||||| |||| ||| | | | ||| || | | Sbjct 5729 TACGTCGGTCGTCCCGATCTGATGATCCAAAGAGAAGACACCTTCCTCAACAAGATTGGA 5788 Query 6737 CAGAGGGTTTGCTGGAATGGACAGGCAGGTGGTTTAGAAGGTTTGAGACAGAAAGGATGG 6796 ||| ||||||||||| |||||||| |||||| | || || | | ||||| |||||| Sbjct 5789 GAGATTGTTTGCTGGAACGGACAGGCTGGTGGTCTGGAGGGGCTCTGCCAGAAGGGATGG 5848 Query 6797 AGTATTCTTAATT------TGCTGG-TCAT-ACAGAGAGAAGCGAAAATCCGGAATACCG 6848 || |||| |||| | |||| | || | |||||| |||| |||||| Sbjct 5849 AGCGTTCTGAATTATCTCATTCTGGATGATGAGTCAGAGAA--GAAA------AATACCA 5900 Query 6849 CAGTTAAAGTGCTAGCACAAGGCGACAATCAAGTCATATGTACACAGTACAA 6900 || || || || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 5901 ATGTGAACGTCCTGGCCCAAGGAGATAATCAGGTCATTTGTACCCACTACAA 5952 >seq46121 Length=3043 Score = 109 bits (120), Expect = 4e-20 Identities = 288/437 (66%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 6374 CTTAGGGAATACTTTGTTGTCACAGAGTATTTGATCAAGACTCACTTTGTGCCATTGTTC 6433 || || ||||| || || || || || || | ||||| || || || ||| ||||| Sbjct 1347 CTGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTC 1288 Query 6434 CATGGGCTGACCATGGCTGATGATATGACAGCAGTGATCAAAAAGATGCTGGAAAGCTCG 6493 || || || || ||||| ||||| | || | |||| ||| || || | | || Sbjct 1287 CAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCA 1228 Query 6494 TCTGGTCAAGGGCTAACAAACTACGACAGCGTTTGTATTGCAAATCATATTGACTATGAA 6553 ||| ||||| || | || || |||| ||||| || || || ||||| ||| Sbjct 1227 GATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAA 1168 Query 6554 AAATGGAATAATCATCAACGAAAATTGTCCAATGGACCTGTGTTTAAAGTCATGGGACAA 6613 |||||||| || |||||||| ||| ||||| || ||| || |||| ||||| || Sbjct 1167 AAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAG 1108 Query 6614 TTCTTGGGTTATCCAAATTTGATATACCGGACACATGAGTTTTTTGAGAAAAGTTTAATT 6673 ||| || || |||||| | || | |||| ||||| || ||||| || ||| | | Sbjct 1107 TTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTG 1048 Query 6674 TACTATAATGAAAGACCGGATCTCATGAAAGTCAGAAATGGGATCTTAGAAAAT-AGCAC 6732 || ||| || || ||| || | ||| || |||||| ||| ||| || | Sbjct 1047 TATTATGTTGGAATACCAGACTTAATGCTCCAACGAGATGGGACTTTAATCAATAAGGAA 988 Query 6733 ACATCAGAGGGTTTGCTGGAATGGACAGGCAGGTGGTTTAGAAGGTTTGAGACAGAAAGG 6792 | | || || |||||||| || || |||| | | | ||||| | || | || || Sbjct 987 AGA-CACGTTGTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAAGGG 929 Query 6793 ATGGAGTATTCTTAATT 6809 |||||| ||||||||| Sbjct 928 CTGGAGTGTTCTTAATT 912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35353635289216