Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020806.1 Length=11088 Score E Sequences producing significant alignments: (Bits) Value seq46121 168 5e-38 seq263735 149 4e-32 seq250369 134 1e-27 seq22788 107 1e-19 seq122679 86.0 4e-13 >seq46121 Length=3043 Score = 168 bits (186), Expect = 5e-38 Identities = 357/525 (68%), Gaps = 16/525 (3%) Strand=Plus/Minus Query 6334 CTGAGAGAATATTTTGTGATCACGGAATATCTAATTAAGACACACTTTGTACCACTTTTC 6393 |||||||||||||| || | || ||||| ||||| || ||| || || ||||| ||| Sbjct 1347 CTGAGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTC 1288 Query 6394 CACGGCTTGACAATGGCAGATGACATGACGGCTGTAATAAAGAAAATGTTGGAAAGTTCA 6453 || ||| | || ||||| |||||| | || | || | | ||| ||||| | | |||| Sbjct 1287 CAAGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCA 1228 Query 6454 AGTGGACAGGGTCTAAAAGATTATTCGGCAGTATGCATTGCAAACCACATTGACTATGAG 6513 ||| || || ||||||||| | | |||||||| |||||||| ||||| || Sbjct 1227 GATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAA 1168 Query 6514 AAATGGAACAACCATCAGAGGAAACGGTCAAATGAACCAATTTTTAAAGTCATGGGTCAA 6573 ||||||||||||||||| ||||| || || ||| | || |||| ||||| || Sbjct 1167 AAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAG 1108 Query 6574 TTCTTGGGGTTTCCCAACCTTATATCGAGGACTCATGAATTCTTTGAGAAAAGTCTCATC 6633 ||| || | || || || || | ||||||||||| |||||||| || ||||| | Sbjct 1107 TTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTG 1048 Query 6634 TATTATAATGGAAGGCCTGATTTGATGAAGGTGCAAGATGGAAGACTTGTGAAC-ACAAC 6692 |||||| ||||| || || || ||| | |||||| ||||| | | | | || Sbjct 1047 TATTATGTTGGAATACCAGACTTAATGCTCCAACGAGATGG--GACTT-TAATCAATAAG 991 Query 6693 GAA--GCAATTGGTTTGTTGGGAAGGACAGGCAGGCGGATTAGAGGGGTTAAGACAGAAG 6750 ||| || | || || ||| | || || |||| | | || || | || | ||| Sbjct 990 GAAAGACACGTTGTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAAG 931 Query 6751 GGATGGAG-CATCTTAAACTTATTGGTTATTCAAAG----GGAATCCAAGATTCGGAACA 6805 || ||||| |||||| |||| | | ||| || |||||||| ||| | Sbjct 930 GGCTGGAGTGTTCTTAA--TTATCTAATCCTAGAAGACGAGGCATCCAAGA---AGAATA 876 Query 6806 CAGCAGTTAAAGTCCTTGCACAAGGTGATAATCAAGTAATATGCA 6850 | ||| || |||||||| ||||| |||| |||||||| |||| Sbjct 875 CTAAAGTAAATGTCCTTGCTCAAGGAGATATCCAAGTAATCTGCA 831 >seq263735 Length=2160 Score = 149 bits (164), Expect = 4e-32 Identities = 452/691 (65%), Gaps = 12/691 (2%) Strand=Plus/Plus Query 6188 TAGATACACCTGCCACTAACTGGTTGGAGTTTTTGGAAGAAATTGACAAAAATGGGTTGA 6247 |||| ||||||| || || ||| | |||||| | || || | | ||||| || Sbjct 1142 TAGACTCACCTGCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGC 1201 Query 6248 GTGATGATGACCTGGTGATTGGGCTAAAAGGGAAGGAAAGAGAATTGAAGATAGCCGGGA 6307 ||||| || || || || || ||| || || | ||| |||||| | || | Sbjct 1202 CCGATGAGTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTA 1261 Query 6308 GATTTTTCTCACTAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATATCTAA 6367 ||||||| | ||||||| ||| | | || ||||||||| | || |||| | ||| Sbjct 1262 GATTTTTTACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAA 1321 Query 6368 TTAAGACACACTTT-GTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACGGCT 6426 | || | || ||| || || | || | | | || ||||| ||||| | || | Sbjct 1322 TAAAAAAACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAA 1381 Query 6427 GTAATAAAGAAAATGTTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTATTCG-GCAGT 6485 |||| ||||| ||| || | | ||| ||| || || ||||||||| ||| | Sbjct 1382 GTAACTAAGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCA-T 1440 Query 6486 ATGCATTGCAAACCACATTGACTATGAGAAATGGAACAACCATCAGAGGAAACGGTCAAA 6545 || ||||| ||||||||||| ||| |||||||| || || ||||| || ||| || Sbjct 1441 CTGTATTGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAA 1500 Query 6546 TGAACCAATTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATCGAGGAC 6605 | | |||| ||| ||||||||||| || || | || | || ||| |||| Sbjct 1501 CAAGTATGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGAC 1560 Query 6606 TCATGAATTCTTTGAGAAAAGTCTCATCTATTATAATGGAAGGCCTGATTTGATGAAGGT 6665 ||||||||| ||||| ||||| || || ||||| | | || ||||| ||| || Sbjct 1561 TCATGAATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGT 1620 Query 6666 GCAAGATGGAAGACTTGTGAACACAAC----GAAGCAATTGGTTTGTTGGGAAGGACAGG 6721 ||| |||| || |||| ||| ||| || | || |||||| | || ||| Sbjct 1621 AAGAGACGGAACCCTGCAAAACAAAACCCCAGAA-CAGATCGTGTGTTGGAAGGGCCAGA 1679 Query 6722 CAGGCGGATTAGAGGGGTTAAGACAGAAGGGATGGAGCATCTTAAACTTATTGGTTATTC 6781 ||| || | ||||| | |||||||| ||||||||||| |||| | ||| || | Sbjct 1680 AAGGTGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTAG 1739 Query 6782 A--AAGGGAATCCAAGATTCGGAACACAGCAGTTAAAGTCCTTGCACAAGGTGATAATCA 6839 | ||| | ||||| | || || ||| || || | || ||||| |||||||| Sbjct 1740 AAGAAGAGGCCTCAAGAGT--AAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCA 1797 Query 6840 AGTAATATGCACACAGTACAAGACAAAACAA 6870 || || || || || || |||| ||||| Sbjct 1798 GGTTATTTGTACTCATTATAAGAGGCAACAA 1828 >seq250369 Length=726 Score = 134 bits (148), Expect = 1e-27 Identities = 257/377 (68%), Gaps = 20/377 (5%) Strand=Plus/Minus Query 6262 GTGATTGGGCTAAAAGGGAAGGAAAGAGAATTGAAGATAGCCGGGAGATTTTTCTCACTA 6321 || |||||| | | ||| || || |||| |||||| | ||| ||||||||| | ||| Sbjct 487 GTCATTGGGTTGAGAGGAAAAGAGGGAGAGATGAAGAGGGTCGGAAGATTTTTCGCTCTA 428 Query 6322 ATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATATCTAATTAAGACACACTTT 6381 ||||| ||| | || | | || |||||| | || || ||||| ||||| ||||||| Sbjct 427 ATGTCTTGGGATCTTCGGGTGTACTTTGTGCTAACAGAGTATCTCATTAAAGAACACTTT 368 Query 6382 GTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACGGCTGTAATAAAGAAAATG 6441 || || || ||| | || ||||||||||| |||| |||| | || | | ||||||| Sbjct 367 GTCCCCCTATTCAAAGGATTGACAATGGCCAATGATCTGACCGAAGTTACCAGGAAAATG 308 Query 6442 TTGGAAAGT---TCAAGTGGACAGGGTCTAAAAGATTATTCGGCAGTATGCATTGCAAAC 6498 ||||| || || |||||| ||||| ||| | | || ||||| Sbjct 307 --AAAAAGTTACTCGGACGGGCAGGGTTGTCCCGATTACTCGAAGATCTCTATAGCAAAT 250 Query 6499 CACATTGACTATGAGAAATGGAACAACCATCAGAGGAAACGGTCAAATGAACCAATTTTT 6558 |||| || || | || ||||| || |||| |||| ||| | | ||| Sbjct 249 TACATCGATTACAAAAAGTGGAATAATCATC------AACG-------GAAGGAGTCTTT 203 Query 6559 AAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATCGAGGACTCATGAATTCTTT 6618 | |||||||||||||||||||| | || | ||| || | | |||||||| |||||| Sbjct 202 ACCGTCATGGGTCAATTCTTGGGCTACCCTACCCTCATTGCCTGCACTCATGAGTTCTTT 143 Query 6619 GAGAAAAGTCTCATCTA 6635 ||| |||||||||||| Sbjct 142 GAG--AAGTCTCATCTA 128 >seq22788 Length=2006 Score = 107 bits (118), Expect = 1e-19 Identities = 193/282 (68%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 6254 ATGACCTGGTGATTGGGCTAAAAGGGAAGGAAAGAGAATTGAAGATAGCCGGGAGATTTT 6313 || || |||| || || |||| |||||| ||| ||||| |||||| ||| |||| || Sbjct 1815 ATTACTTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATT 1756 Query 6314 TCTCACTAATGTCGTGGAAGCTGAGAGAATATTTTGTGATCACGGAATATCTAATTAAGA 6373 || | ||||||| ||||| || | || || ||||||||||| || ||||| || |||| Sbjct 1755 TCGCCTTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGA 1696 Query 6374 CACACTTTGTACCACTTTTCCACGGCTTGACAATGGCAGATGACATGACGGCTGTAATAA 6433 | | ||| || | ||| | || | |||||||| || || | || | || || | Sbjct 1695 AGTATTATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGA 1636 Query 6434 AGAAAATGTTGGAAAGTTCAAGTGGACAGGGTCTAAAAGATTATTCGGCAGTATGCATTG 6493 | || ||| || | |||| ||| || || ||| || | ||| ||||| | Sbjct 1635 AAAAGATGATGAACCATTCAGATGGTCAAGGATGTGCAGACTACACCAGAGTCTGCATAG 1576 Query 6494 CAAACCACATTGACTATGAGAAATGGAACAACCATCAGAGGA 6535 | ||||| || || || || ||||||||||| ||| ||| Sbjct 1575 CGAACCATATAGATTACACCAAGTGGAACAACCACCAGCGGA 1534 >seq122679 Length=1484 Score = 86.0 bits (94), Expect = 4e-13 Identities = 127/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 6487 TGCATTGCAAACCACATTGACTATGAGAAATGGAACAACCATCAGAGGAAACGGTCAAAT 6546 ||||| || |||||| ||||||| || ||||||||||| || | || ||| ||| Sbjct 762 TGCATAGCCAACCAC--TGACTATACCAAGTGGAACAACCACCAACGCAAGGAGTCTAAT 819 Query 6547 GAACCAATTTTTAAA--GTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATCGAGGA 6604 | || |||| | |||||||| | ||| || || | |||||| || | | | Sbjct 820 AAGT--ATGTTTACACTGTCATGGGACGATTTTTAGGATATCCCAAAGGCATCGCTCGAA 877 Query 6605 CTCATGAATTCTTTGAGAAAAGTCTCATCTATTATAATGGAAGGCCTGATTTGATGA 6661 | ||||| || ||| ||||||||||||| |||||| ||| |||| |||||||||| Sbjct 878 CCCATGAGTTTTTTTAGAAAAGTCTCATATATTATGTGGGACGGCCGGATTTGATGA 934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35251567774848