Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_022580.1 Length=12676 Score E Sequences producing significant alignments: (Bits) Value seq263735 149 5e-32 seq22788 134 1e-27 seq46121 111 1e-20 seq110009 96.9 3e-16 >seq263735 Length=2160 Score = 149 bits (164), Expect = 5e-32 Identities = 412/625 (66%), Gaps = 19/625 (3%) Strand=Plus/Plus Query 7707 TCTTTGGTTATTGGTTTACAAGCCAAAGAAAGGGAAATCAAG-GATGAGGGTCGATTTTT 7765 ||| | ||||| || | | || ||||| ||||||| ||| || ||| | ||||||| Sbjct 1210 TCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGG-TAGATTTTT 1268 Query 7766 CTCTTTAATGTCATGGGAATTACGGGAATATTTTGTTGTAACAGAATACTTAATTAAAGA 7825 | ||||||||||||| ||||| || |||||||| | || |||| ||||| ||| | Sbjct 1269 TACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAA 1328 Query 7826 GC-ATTTTGTTCCATTGTTCCATGGATTAACGATGGCAGATGATTTAACCACTGTGATGA 7884 | |||||| || || || || || |||| ||||| |||||| | || || | | Sbjct 1329 ACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTA 1388 Query 7885 AAAAGATGCTGGACAATACAATCGGCCAAGGTGGCAAGGACTACACACAAATTTGCATAG 7944 | |||||| || | ||| | || ||||| || || || ||| || || || | Sbjct 1389 AGAAGATGATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTG 1448 Query 7945 CCAATCACTTTGATTATGAGAAATGGAACAATCATCAGAGGAAGGAATCTANNNNNNNNN 8004 | || ||| |||||||| |||||||| ||||| ||||| ||||| || | Sbjct 1449 CTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATG 1508 Query 8005 NNNNNNNNNNNATGGGGCAGTTTCTCGGATATCCCTCCTTAATTGAGAGAACTCATGAAT 8064 ||||| || ||| | ||||| || | || || | |||||||||| Sbjct 1509 TATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAAT 1568 Query 8065 TCTTTGAAAAAAGCTGGATTTATTATAAGGACAGAGCAGATT-----GT--TTAGA-AGT 8116 | |||||||||||| |||||||| | | | | |||| || | ||| | Sbjct 1569 TTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACG 1628 Query 8117 GAAGGGTGATAGAATTTACTCCACTGAAGGGCAATTCTGTTGGAATGGACAACTAGGAGG 8176 ||| || | | || ||| ||| | | |||||||| || || ||| || Sbjct 1629 GAACCCTGCAAAACAAAACCCCA--GAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGG 1686 Query 8177 ATTGGAAGGTCTCCGACAAAAAGGTTGGAGTATTTTAAATT-TGTTAGTC-ATAAATAGA 8234 |||| || ||| |||| ||||| ||||| ||| |||||| | | | || | || ||| Sbjct 1687 GCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAGAAGA 1746 Query 8235 GAGAGCAAGATACGAAATACCATGGTGAAGTGTTTGGCCCAAGGAGATAATCAAGTGATA 8294 | |||| | |||||||| || || ||| ||||||||||||||||| || || Sbjct 1747 GGCCTCAAG--AGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATT 1804 Query 8295 TTTACATCA-TATAAGATTGAACAA 8318 | ||| ||| ||||||| ||||| Sbjct 1805 TGTAC-TCATTATAAGAGGCAACAA 1828 >seq22788 Length=2006 Score = 134 bits (148), Expect = 1e-27 Identities = 208/291 (71%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 7702 AAAATTCTTTGGTTATTGGTTTACAAGCCAAAGAAAGGGAAATCAAGGATGAG-GGTCGA 7760 |||||| |||||||| || || || |||||| | ||||| ||| | || || || Sbjct 1818 AAAATTACTTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAG-AGGATCGGAAGA 1760 Query 7761 TTTTTCTCTTTAATGTCATGGGAATTACGGGAATATTTTGTTGTAACAGAATACTTAATT 7820 | |||| | |||||||||||| || | || || || ||||| | ||||| || | || Sbjct 1759 TATTTCGCCTTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATC 1700 Query 7821 AAAGAGCATTTTGTTCCATTGTTCCATGGATTAACGATGGCAGATGATTTAACCACTGTG 7880 || || ||| |||||| || ||| | || |||| ||||| || ||| ||||| ||| Sbjct 1699 AAGAAGTATTATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTG 1640 Query 7881 ATGAAAAAGATGCTGGACAATACAATCGGCCAAGG-TG-GCAAGGACTACACACAAATTT 7938 |||||||||||| || || || || || ||||| || ||| |||||||| | | | Sbjct 1639 ATGAAAAAGATGATGAACCATTCAGATGGTCAAGGATGTGCA--GACTACACCAGAGTCT 1582 Query 7939 GCATAGCCAATCACTTTGATTATGAGAAATGGAACAATCATCAGAGGAAGG 7989 ||||||| || || | ||||| || |||||||| || ||| ||| || Sbjct 1581 GCATAGCGAACCATATAGATTACACCAAGTGGAACAACCACCAGCGGATGG 1531 >seq46121 Length=3043 Score = 111 bits (122), Expect = 1e-20 Identities = 205/302 (68%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 7791 GAATATTTTGTTGTAACAGAATACTTAATTAAAGAGCATTTTGTTCCATTGTTCCATGGA 7850 |||||||| || || || |||||| |||| ||||| ||||| |||||| ||||||| || Sbjct 1341 GAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGC 1282 Query 7851 TTAACGATGGCAGATGATTTAACCACTGTGATGAAAAAGATGCTGGACAATACAATCGGC 7910 | || ||||| ||||| | ||| |||| ||| || || | ||| || || Sbjct 1281 CTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGATGGG 1222 Query 7911 CAAGG-TGGCAAGGACTACACACAAATTTGCATAGCCAATCACTTTGATTATGAGAAATG 7969 ||||| || | || | || || ||||||||| || || ||| | || || || ||||| Sbjct 1221 CAAGGATGTCCAG-ATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAAAAATG 1163 Query 7970 GAACAATCATCAGAGGAAGGAATCTANNNNNNNNNNNNNNNNNNNNATGGGGCAGTTTCT 8029 |||||| ||||| |||| ||||| | ||||| ||||| | Sbjct 1162 GAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTCCA 1103 Query 8030 CGGATATCCCTCCTTAATTGAGAGAACTCATGAATTCTTTGAAAAAAG-CTGGATTTATT 8088 ||||| || |||| || |||||||| ||||||||||| || |||| | |||| Sbjct 1102 AGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGG-TGTATT 1044 Query 8089 AT 8090 || Sbjct 1043 AT 1042 >seq110009 Length=642 Score = 96.9 bits (106), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 7759 GATTTTTCTCTTTAATGTCATGGGAATTACGGGAATATTTTGTTGTAACAGAATACTTAA 7818 |||| ||| | ||||||| |||| || || |||||||||||| | || |||| || | Sbjct 423 GATTCTTCGCCCTAATGTCCTGGGCCTTGCGAGAATATTTTGTTTTGACCGAATTATTGA 482 Query 7819 TTAAAGAGCATTTTGTTCCATTGTTCCATGGATTAACGATGGCAGATGATTTAACCACTG 7878 | ||| | ||||||||| || || ||||| |||| ||||| |||||| | || | Sbjct 483 TAAAAAACTTTTTTGTTCCTTTATTTGATGGACTAACAATGGCCGATGATCTTACTGAGG 542 Query 7879 TGATGAAAAAGATGCTGGACAA-TACAATCGGCCAAGGTGGCAAGGACTACACACAAATT 7937 | | ||| |||||| || |||| | | || || ||||| || || ||| | | || Sbjct 543 TCACGAAGAAGATGATGAACAACTCCGAT-GGTCAAGGGTGCCCAGATTACTCGCGTATC 601 Query 7938 TGCATAGCCAATCAC 7952 || |||||||||||| Sbjct 602 TGTATAGCCAATCAC 616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40316668175360