Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_022581.1 Length=11806 Score E Sequences producing significant alignments: (Bits) Value seq46121 172 4e-39 seq263735 170 1e-38 seq42553 100 2e-17 seq36779 98.7 7e-17 >seq46121 Length=3043 Score = 172 bits (190), Expect = 4e-39 Identities = 402/596 (67%), Gaps = 24/596 (4%) Strand=Plus/Minus Query 6714 GTCTTAGAGACACTCTTACAAAAACCTGCCACAAATTGGCCAGAATTCTTGTCCTCGATT 6773 |||||| |||| ||| || | |||||||||||| ||| ||| ||| | |||| Sbjct 1503 GTCTTAAAGACCCTCATAGACAAACCTGCCACAGTCTGGAAAGACTTCCTCCAGAGGATT 1444 Query 6774 GAAAAAGATGGCCTACCTAAAGACAGCTTGATTATCGGACTGAAGGGAAAAGAGAGGGAA 6833 | | || || || ||| ||||| | | |||||| ||| | |||||||| |||| Sbjct 1443 AATGACGAGGGACTTCCTGAAGACTCTCTAGTCATCGGATTGAGGAGAAAAGAGCGGGAC 1384 Query 6834 CTaaaaaaaGCTGGACGGTTCTTTT-CTCTAATGTCCTGGGAATTGAGGGAGTATTTTGT 6892 | || | || || || |||| |||| ||| |||| || || ||||| || Sbjct 1383 TTGAAGCGGGTCGGGCGTTTTTTTTGCTCTCATGACCTGAGA-------GAATATTTCGT 1331 Query 6893 AATAACTGAATACCTGATCAAAACTCATTACGTCCCTCTCTTTAAAGGATTGACCATGGC 6952 | ||||||||||| |||||| |||| ||| || || || |||| | || ||||| Sbjct 1330 CGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAAGGCCTCACTATGGC 1271 Query 6953 AGATGACATGACGGAGGTCGTCAAG-AAGATGTTAGAAAGAAGTCAA--GGACAAGGAGA 7009 |||||| | || ||||| | || | ||| |||| || || ||| || |||||| Sbjct 1270 GGATGACCTCACCGAGGT-GACACGGAAGGTGTTG--AATAATTCAGATGGGCAAGGATG 1214 Query 7010 GGATGATTA--CGAGCACGTCAGCATTGCCAACCACATTGATTATGAAAAATGGAACAAC 7067 ||||| | || | | ||||||| |||||||| || || ||||||||||||||| Sbjct 1213 TCCAGATTATTCAAGAATTT--GCATTGCTAACCACATAGACTACGAAAAATGGAACAAC 1156 Query 7068 CATCAAAGGAAAGAGTCTAACGGCCCGGTGTTCAGAGTCATGGGACAATTTCTGGGGTAC 7127 |||||| ||||||| || ||| | || ||| ||| ||||| || || | || ||| Sbjct 1155 CATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTTCCAAGGATAC 1096 Query 7128 CCTAGTTTGATAGAAAAGACCCATGACTTCTTTGAGCAAAGCTTGATCTATTATAATGGC 7187 || | | | || | ||| |||||||||||||| | || || | |||||| ||| Sbjct 1095 CCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTATTATGTTGGA 1036 Query 7188 AGACCTGACTTGATG---CAGACAGATGGAGACGAGTTGCAAAACCGAACGGAAGCTTTG 7244 | ||| ||||| ||| || |||||| ||| ||| | ||| | | || Sbjct 1035 ATACCAGACTTAATGCTCCAACGAGATGG-GACTTTAATCAATAAGGAAAGACACGTT-- 979 Query 7245 GTGTGTTGGAATGGTCAGAAAGGAGGATTAGAAGGACTCAGGCAAAAAGGATGGAG 7300 || || ||||| || || ||||| | ||||| |||||| |||| || ||||| Sbjct 978 GTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAAGGGCTGGAG 923 >seq263735 Length=2160 Score = 170 bits (188), Expect = 1e-38 Identities = 445/672 (66%), Gaps = 14/672 (2%) Strand=Plus/Plus Query 6737 ACCTGCCACAAATTGGCCAGAATTCTTGTCCTCGATTGAAAAAGATGGCCTACCTAAAGA 6796 |||||| ||||||||| | |||| ||| | || | | ||||||| || | || Sbjct 1149 ACCTGCTACAAATTGGAAACAATTTTTGCAGGAGGTTAATGACAATGGCCTGCCCGATGA 1208 Query 6797 CAGCTTGATTATCGGACTGAAGGGAAAAGAGAGGGAACTaaaaaaaGCTGGACGGTTCTT 6856 | |||| ||||| || |||||| ||||| | || | | || | || || Sbjct 1209 GTCTCTAGTTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTT 1268 Query 6857 TTCTCTAATGTCCTGGGAATTGAGGGAGTATTTTGTAATAACTGAATACCTGATCAAAAC 6916 | | ||||||| |||| || | ||||||||||| | || |||| | || |||| Sbjct 1269 TACCTTAATGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAA 1328 Query 6917 TCATTAC-GTCCCTCTCTTTAAAGGATTGACCATGGCAGATGACATGACGGAGGTCGTCA 6975 | || ||||| | ||| | || | |||||||| ||||| | || || || | Sbjct 1329 ACTTTTTTGTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTA 1388 Query 6976 AGAAGATGTTAGAAAGAAGTC--AAGGACAAGGAGAGGATGATTACGAGCACGTCAGCAT 7033 |||||||| | || || || | || |||||| ||||| | | || | || Sbjct 1389 AGAAGATGATG--AATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTAT 1446 Query 7034 TGCCAACCACATTGATTATGAAAAATGGAACAACCATCAAAGGAAAGAGTCTAACGGCCC 7093 ||| ||||||||||||||| ||||||||| || || || || || ||||| ||| Sbjct 1447 TGCTAACCACATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTA 1506 Query 7094 GGTGTTCAGAGTCATGGGACAATTTCTGGGGTACCCTAGTTTGATAGAAAAGACCCATGA 7153 || || ||||| ||||| |||||| | || ||||| ||| |||||||| ||| ||||| Sbjct 1507 TGTATTTAGAGTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGA 1566 Query 7154 CTTCTTTGAGCAAAGCTTGATCTATTATAATGGCAGACCTGACTTGATGCAGACAGATGG 7213 || ||||| ||||| | || ||||| | | | || || || ||| | | | | Sbjct 1567 ATTTTTTGAAAAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATG--GTC-GTAAG 1623 Query 7214 AGACG---AGTTGCAAAACCGAA---CGGAAGCTTTGGTGTGTTGGAATGGTCAGAAAGG 7267 ||||| |||||||| || | ||| | ||||||||||| || |||||||| Sbjct 1624 AGACGGAACCCTGCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGG 1683 Query 7268 AGGATTAGAAGGACTCAGGCAAAAAGGATGGAGCATCCTCAACCTGTTGGTCATCAAAAG 7327 || | || |||||||| || |||||||||||||| | || ||| | | || Sbjct 1684 TGGGCTGGAGGGACTCAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAGA 1743 Query 7328 AGAATCTAAAATCAGAAACACTAAAGTGCAAACTTTGGCCCAGGGAGACAATCAGGTAGT 7387 ||| | || ||| || ||||| | ||| ||||| ||||| |||||||| | Sbjct 1744 AGAGGCCTCAAGAGTAAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTAT 1803 Query 7388 GTGTACCCAATA 7399 ||||| || || Sbjct 1804 TTGTACTCATTA 1815 >seq42553 Length=2057 Score = 100 bits (110), Expect = 2e-17 Identities = 180/262 (69%), Gaps = 16/262 (6%) Strand=Plus/Minus Query 6814 TGAAGGGAAAAGAGAGGGAACTaaaaaaaGCTGGACGGTTCTTTTCTCTAATGTCCTGGG 6873 ||| ||| || ||||| || | |||| | |||| | || ||| |||| |||||||||| Sbjct 610 TGAGGGGGAAGGAGAGAGAGATGAAAAGGGTTGGAAGATTTTTTGCTCTCATGTCCTGGG 551 Query 6874 AATTGAGGGAGTATTTTGTAATAACTGAATACCTGATCAAAACTCATTACGTCCCTCTCT 6933 | | | ||||| ||||| | || || ||||| |||||| || | |||||| | | Sbjct 550 ATCTTCGAGAGTACTTTGTCCTCACAGAGTACCTCATCAAAGAGCACTTCGTCCCCTTGT 491 Query 6934 TTAAAGGATTGACCATGGCAGATGACATGACGGAGGTCGTCAAGAAGATGTTAGAAAGAA 6993 | |||||||| || ||||| || || |||| ||||| | ||||||| | || || Sbjct 490 TCAAAGGATTAACAATGGCCGACGATCTGACTGAGGTTACAAGGAAGATG--ATGAACAA 433 Query 6994 GTCAA--GGACAAGGAGAGGATGATTACGAGCACGTCAGCATTGCCAACCACATTGATTA 7051 |||| |||||||| | | | | || |||| || || ||||| ||||| Sbjct 432 TTCAAACGGACAAGG----------TTCAA--AGATCTGCATAGCAAAACACATCGATTA 385 Query 7052 TGAAAAATGGAACAACCATCAA 7073 | ||| ||||| || |||||| Sbjct 384 TACAAAGTGGAATAATCATCAA 363 >seq36779 Length=13892 Score = 98.7 bits (108), Expect = 7e-17 Identities = 247/378 (65%), Gaps = 42/378 (11%) Strand=Plus/Plus Query 6807 ATCGGACTGAAGGGAAAAGAGAGGGAACTaaaaaaaGCTGGACGGTTCTTTTCTCTAATG 6866 || ||||| | ||| ||||||||||| | |||| ||| || ||||| || | || ||| Sbjct 5391 ATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTATG 5450 Query 6867 TCCTGGGAATTGAGGGAGTATTTTGTAATAACTGAATACCTGATCAAAACTCATTACGTC 6926 |||||||| ||| | || || || || || || ||||| || ||||| || | ||| Sbjct 5451 TCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTGTC 5510 Query 6927 CCTCTCTTTAAAGGATTGACCATGGCAGATGACATGACGGAGGTCGTCAAGAA----GAT 6982 || | ||||| || |||| ||||| |||||| |||| || ||| Sbjct 5511 CCATTATTTAAGGGTCTGACTATGGCCGATGAC-------------TCAATAACTCCGAT 5557 Query 6983 GTTAGAAAGAAGTCAAGGACAAGGAGAGGATGATTACGAGCACGTCAGCATTGCCAACCA 7042 | | || | ||| | ||| | ||| | | || | | || || || Sbjct 5558 G-GACAAGGGTGTCCA-GACTA------------TACTA--AAATCTGTGTAGCGAATCA 5601 Query 7043 CATTGATTATGAAAAATGGAACAACCATCAAAGGAAAGAGTCTAACGGCCCGGTGTTCAG 7102 || || ||||||||||||||||||||| | || | | | || ||| | Sbjct 5602 TATCGACTATGAAAAATGGAACAACCATAACTCCAATCAATAT---------GTATTCCG 5652 Query 7103 AGTCATGGGACAATTTCTGGGGTACCCTAGTTTGATAGAAAAGACCCATGACTTCTTTGA 7162 |||||||| || ||| |||| |||||| | | || ||| ||||||||| |||||||| Sbjct 5653 TGTCATGGGCCAGTTTTTGGGTTACCCTCATCTAATTGAACGGACCCATGAATTCTTTGA 5712 Query 7163 GCAAAGCTTGATCTATTA 7180 | |||| || || ||||| Sbjct 5713 GAAAAGTTTAATTTATTA 5730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37541707628480