Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_022755.1 Length=10692 Score E Sequences producing significant alignments: (Bits) Value seq46121 149 4e-32 seq263735 131 1e-26 seq36779 105 5e-19 seq22788 91.5 1e-14 >seq46121 Length=3043 Score = 149 bits (164), Expect = 4e-32 Identities = 220/306 (72%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 6019 AGAGAATACTTCGTGATAACAGAGTATCTCAT-AAAGACTCATTTTGTTCCTTTGTTTCA 6077 |||||||| ||||| | || || || || || ||||| ||||| ||||| |||| || Sbjct 1344 AGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAA-CATTTCGTTCCACTGTTCCA 1286 Query 6078 CGGGCTCACCATGGCGGACGACCTGACAGCTGTTATGAAGAAAATGATGGAGTCATCTTC 6137 || ||||| |||||||| ||||| || | || | ||| || || | | || || Sbjct 1285 AGGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAA-TAAT--TC 1229 Query 6138 AG---GACAAGGCGCCTCCGACTATGATGCCATTGCCATTGCGAACCATATTGACTATGA 6194 || | ||||| | || ||| ||| |||||| ||||| || ||||| || Sbjct 1228 AGATGGGCAAGGATGTCCAGATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGA 1169 Query 6195 AAAATGGAATAACCATCAACGGAAAGAATCCAATGGTCCTGTCTTCAGAGTCATGGGTCA 6254 ||||||||| ||||||||||||||||||||||| | ||||||| ||| ||||| || Sbjct 1168 AAAATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCA 1109 Query 6255 GTTCCTAGGGTATCCAAATTTAATTTACCGGACGCATGAGTTTTTTGAGAATAGCCTCAT 6314 ||||| ||| || |||||| |||| | |||| ||||| || ||||| || || || | Sbjct 1108 GTTCCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGT 1049 Query 6315 ATATTA 6320 ||||| Sbjct 1048 GTATTA 1043 >seq263735 Length=2160 Score = 131 bits (144), Expect = 1e-26 Identities = 398/607 (66%), Gaps = 10/607 (2%) Strand=Plus/Plus Query 5945 TTATAGGCCTCAAAGCAAAGGAACGTGAGTTGAAAACCGTAGGTCGGTTCTTCTCTCTAA 6004 ||||||| ||| || || || || || |||| | ||||| | || || | ||| Sbjct 1217 TTATAGGACTCCGAGGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAA 1276 Query 6005 TGTCTTGGAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCATAAAGACTCATTTT- 6063 |||| ||| ||| | || || || ||| | || || | | | ||||| | | |||| Sbjct 1277 TGTCATGGGCCTTACGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTT 1336 Query 6064 GTTCCTTTGTTTCACGGGCTCACCATGGCGGACGACCTGACAGCTGTTATGAAGAAAATG 6123 || || || ||| | | || |||||||| || || || || | || | ||||| ||| Sbjct 1337 GTCCCGTTATTTGATAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATG 1396 Query 6124 ATGGAGTCATCTTCAGGACAAGGCGCCTCCGACTATGATGCCATTGCCATTGCGAACCAT 6183 ||| | ||| || ||||| | | || ||| ||| ||||| ||||| Sbjct 1397 ATGAATAATTCTGATGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAACCAC 1456 Query 6184 ATTGACTATGAAAAATGGAATAACCATCAACGGAAAGAATCCAATGGTCCTGTCTTCAGA 6243 ||||| ||| |||||||||||| || || | || || ||||| ||| || ||| Sbjct 1457 ATTGATTATACAAAATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGA 1516 Query 6244 GTCATGGGTCAGTTCCTAGGGTATCCAAATTTAATTTACCGGACGCATGAGTTTTTTGAG 6303 || |||||||| || |||| || |||| | | || | ||||| ||||| |||||||| Sbjct 1517 GTGATGGGTCAATTTTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAA 1576 Query 6304 AATAGCCTCATATATTACAATAACAGACCCGACCTGATGAGAGT-GGTGAATAATACCGT 6362 || ||||| || |||||| | | || || | ||| || | || | ||| | Sbjct 1577 AAAAGCCTTATTTATTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGA-ACCCT 1635 Query 6363 GGAGAAC---AGTTCTGATCAAAGAGTCTGCTGGAATGGTCAGGCAGGGGGGCTCGAAGG 6419 | | ||| | | || || | || || ||||| || ||| ||| ||||| || || Sbjct 1636 GCAAAACAAAACCCCAGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGG 1695 Query 6420 ACTGCGGCAAAAAGGATGGAGTATATTAAATTTGCTGGTGATAG-CTAGGGAATCTC-AG 6477 ||| | || ||||||||||| || |||||| || | ||| | | ||| || Sbjct 1696 ACTCAGACAGAAAGGATGGAGCATTGTAAATTATTTGATTCTAGAAGAAGAGGCCTCAAG 1755 Query 6478 ATTAGAAACACCTCTGTCAAAACTCTGGCACAGGGGGACAATCAGGTGATTTGCACTCAA 6537 | | ||| ||| || || | | || || || || |||||||| ||||| ||||| Sbjct 1756 AGT--AAATACCAAAGTAAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCAT 1813 Query 6538 TATAAGA 6544 ||||||| Sbjct 1814 TATAAGA 1820 >seq36779 Length=13892 Score = 105 bits (116), Expect = 5e-19 Identities = 370/573 (65%), Gaps = 36/573 (6%) Strand=Plus/Plus Query 5971 GAGTTGAAAACCGTAGGTCGGTTCTTCTCTCTAATGTCTTGGAAATTAAGAGAATACTTC 6030 ||| |||||| | |||||||| || | || ||||| ||| | || ||||||||||| Sbjct 5415 GAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTATGTCCTGGGAGTTGCGAGAATACTTC 5474 Query 6031 GTGATAACAGAGTATCTCATAAAGACTCATTTTGTTCCTTTGTTTCACGGGCTCACCATG 6090 ||||| ||||| ||||| || ||| || ||||| || || ||| | || || || ||| Sbjct 5475 GTGATTACAGAATATCTTATCAAGGAGCACTTTGTCCCATTATTTAAGGGTCTGACTATG 5534 Query 6091 GCGGACGACCTGACAGCTGTTATGAAGAAAATGATGGAGTCATCTTCAGGACAAGGCGCC 6150 || || ||| | | || ||| | || || ||| ||| || | Sbjct 5535 GCCGATGACTCAATAACTCCGATGGACAAG-----GGTGTC-----CAG-ACTAT----- 5578 Query 6151 TCCGACTATGATGCCATTGCCATTGCGAACCATATTGACTATGAAAAATGGAATAACCAT 6210 |||| || | || | ||||| ||||| ||||||||||||||||| |||||| Sbjct 5579 ----ACTAAAAT--CTGTG---TAGCGAATCATATCGACTATGAAAAATGGAACAACCAT 5629 Query 6211 CAACGGAAAGAATCCAATGGTCCTGTCTTCAGAGTCATGGGTCAGTTCCTAGGGTATCCA 6270 ||| |||||| ||| ||| | |||||||| ||||| | || || || Sbjct 5630 -AAC--------TCCAATCAATATGTATTCCGTGTCATGGGCCAGTTTTTGGGTTACCCT 5680 Query 6271 AATTTAATTTACCGGACGCATGAGTTTTTTGAGAATAGCCTCATATATTACAATAACAGA 6330 || ||||| | ||||| ||||| || |||||||| || | || |||||| | Sbjct 5681 CATCTAATTGAACGGACCCATGAATTCTTTGAGAAAAGTTTAATTTATTACGTCGGTCGT 5740 Query 6331 CCCGACCTGATGA-GAGTGGTGAATAATACCGTGGAGAACAGTTCTGATCAAAGAGTCTG 6389 ||||| ||||||| | ||| | ||| | |||| || | | || || Sbjct 5741 CCCGATCTGATGATCCAAAGAGAA-GACACCTTCCTCAACAAGATTGGAGAGATTGTTTG 5799 Query 6390 CTGGAATGGTCAGGCAGGGGGGCTCGAAGGACTGCGGCAAAAAGGATGGAGTATATTAAA 6449 |||||| || ||||| || || || || || || | || || |||||||| | | || Sbjct 5800 CTGGAACGGACAGGCTGGTGGTCTGGAGGGGCTCTGCCAGAAGGGATGGAGCGTTCTGAA 5859 Query 6450 TTTGCTGGTGATAGCTAGGGAATCTCAGATTAGAAACACCTCTGTCAAAACTCTGGCACA 6509 || || | | | | || || ||| | ||| ||| ||| || ||||| || Sbjct 5860 TTATCTCATTCTGGATGATGAGTCAGAGAAGAAAAATACCAATGTGAACGTCCTGGCCCA 5919 Query 6510 GGGGGACAATCAGGTGATTTGCACTCAATATAA 6542 || || |||||||| ||||| || || || || Sbjct 5920 AGGAGATAATCAGGTCATTTGTACCCACTACAA 5952 >seq22788 Length=2006 Score = 91.5 bits (100), Expect = 1e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6002 TAATGTCTTGGAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCATAAAGACTCATT 6061 ||||||| |||||| | | || ||||| ||||| ||||||||||| || |||| ||| Sbjct 1749 TAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTATT 1690 Query 6062 TTGTTCCTTTGTTTCACGGGCTCACCATGGCGGACGACCTGACAGCTGTTATGAAGAAAA 6121 |||||| || || | ||||| || ||||| ||||| || || | || ||||| || | Sbjct 1689 ATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAGA 1630 Query 6122 TGATG 6126 ||||| Sbjct 1629 TGATG 1625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 33988482284544