Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_024473.1 Length=11123 Score E Sequences producing significant alignments: (Bits) Value seq263735 242 3e-60 seq46121 141 7e-30 seq22788 131 1e-26 seq53828 127 1e-25 seq36779 102 6e-18 >seq263735 Length=2160 Score = 242 bits (268), Expect = 3e-60 Identities = 597/896 (67%), Gaps = 12/896 (1%) Strand=Plus/Plus Query 6220 GGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTCTTCTCATTGATGTCATGGAGATTA 6279 || ||||| | ||| |||| | | || ||||| || | || ||||||||| ||| Sbjct 1231 GGTAAAGAGCGGGAAATGAAGAGAATAGGTAGATTTTTTACCTTAATGTCATGGGCCTTA 1290 Query 6280 AGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACA-TACTACGTTCCCTTGTTTAA 6338 | || ||||||||| | || || | ||||| |||| | | | || || || ||| | Sbjct 1291 CGTGAGTATTTTGTGTTGACCGAATTTTTAATAAAAAAACTTTTTTGTCCCGTTATTTGA 1350 Query 6339 GGGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAGATGATGGACAGTTCATC 6398 | |||| ||||| ||||| ||||| || | ||||||||||||| | | ||| Sbjct 1351 TAGACTAACCATGGCTGATGATCTCACTGAAGTAACTAAGAAGATGATGAATAATTCTGA 1410 Query 6399 AGGTCAAGGGCTCGATGATTATTCATCAGTTTGTTTGGCTAACCATATTGACTACGAGAA 6458 |||||||| | ||||||||| | ||| | |||||||| ||||| || || Sbjct 1411 TGGTCAAGGATGCCCAGATTATTCACGCATCTGTATTGCTAACCACATTGATTATACAAA 1470 Query 6459 GTGGAATAACCATCAAAGAAAGGAATCTAATGGTCCCATCTTCAGAGTCATGGGACAGTT 6518 |||||||| || || |||||||| || || | || ||||| ||||| || || Sbjct 1471 ATGGAATAATCACCAGAGAAAGGAGTCCAACAAGTATGTATTTAGAGTGATGGGTCAATT 1530 Query 6519 TCTGGGTTATCCATCACTCATAGAGAGAACTCATGAATTTTTTGAGAAAAGCTTAATTTA 6578 | | || || ||| || ||||| | ||||||||||||||||| |||||| | ||||| Sbjct 1531 TTTAGGATACCCAAGTCTGATAGAACGGACTCATGAATTTTTTGAAAAAAGCCTTATTTA 1590 Query 6579 TTACAATGGGCGTCCTGATCTAATGACCGTTCGAAATGGCACATTG---TGTAATTCCAC 6635 |||| | ||||| ||| ||||| ||| || | || || || || || | Sbjct 1591 TTACGTAGCCCGTCCGGATTTAATGGTCGTAAGAGACGGAACCCTGCAAAACAAAACCCC 1650 Query 6636 TAAGCACCGGGTTTGTTGGAATGGGCAAAAAGGAGGTTTGGAAGGACTAAGACAAAAGGG 6695 | || || |||||||| || || ||||| || |||| ||||| ||||| || || Sbjct 1651 AGAACAGATCGTGTGTTGGAAGGGCCAGAAAGGTGGGCTGGAGGGACTCAGACAGAAAGG 1710 Query 6696 ATGGAGTATTGTGAATCTCTTGGTTATTCAAAGGGAAGCCAAAATTCGAAACACAGCAGT 6755 |||||| ||||| ||| ||| || | || || ||| || ||| || ||| Sbjct 1711 ATGGAGCATTGTAAATTATTTGATTCTAGAAGAAGAGGCCTCAAGAGTAAATACCAAAGT 1770 Query 6756 GAAGGTCTTAGCACAGGGAGATAATCAGGTTATATGCACTCAATACAAGACAAAGAAAAC 6815 || || ||||| || ||||||||||||||||| || ||||| || |||| | | || Sbjct 1771 AAATGTTTTAGCCCAAGGAGATAATCAGGTTATTTGTACTCATTATAAGAGGCA-ACAAG 1829 Query 6816 CAGATCAGAATTGGA-ATTAAGAGCAGTCTTACATCAGATGGCAGGAAACAATAATAAAA 6874 || || || | | |||| || || ||| || ||||| ||||| | | Sbjct 1830 GCGACCAAGATCGTAGCTTAAACCCACGGTT-GGTCA-ATATTTGGAAA-AATAACGATA 1886 Query 6875 TC---ATGGAAGAAATTAAGAGAGGGACAGAGAAGTTGGGCCTAATCATAAATGATGATG 6931 || ||| ||| || | || | |||| || | || || || ||||| || || | Sbjct 1887 TCCTGATGAAAGCGATCAGAAGGGCTGCAGATAAAATAGGACTTATAATAAACGAAGACG 1946 Query 6932 AGACTATGCAATCAGCAGACTATTTAAATTACGGGAAAATTCCAATTTTCCGGGGAGTCA 6991 |||| ||||||| |||| | ||||||||| |||||| | | | | ||| Sbjct 1947 AGACAATGCAATAAGCAACTTTTTTAAATTATGGGAAAGTCTTGTTCATACTTGGAAATT 2006 Query 6992 TAAGAGGACTAGAAACAAAGAGATGGTCACGGGTAACATGTGTCACTAATGATCAGATCC 7051 ||| || | |||||||||| | |||| || ||||| || ||||| || || ||| ||| Sbjct 2007 TAATAGCATTAGAAACAAAAAAATGGAGTCGAGTAACTTGCGTCACCAACGACCAGGTCC 2066 Query 7052 CGACATGTGCCAATTTGATGTCCTCAGTCTCCACCAATGCTTTGACTGTTGCTCAT 7107 | || | | ||| | |||| || || ||||||| | | || || |||||| Sbjct 2067 CCACTTTGGGAAATATTTTGTCTTCCGTTGTCACCAATTCCCTAACCGTAGCTCAT 2122 >seq46121 Length=3043 Score = 141 bits (156), Expect = 7e-30 Identities = 297/439 (68%), Gaps = 14/439 (3%) Strand=Plus/Minus Query 6280 AGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACATACTACGTTCCCTTGTTTAAG 6339 || |||||||| || | || || ||| |||||||| | | | |||||| |||| | Sbjct 1344 AGAGAATATTTCGTCGTTACTGAATACCTAATCAAAGAACATTTCGTTCCACTGTTCCAA 1285 Query 6340 GGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAGATGATGGACAGTTCATCA 6399 || | |||||||| ||||||||||| ||||| |||| || || | | |||| Sbjct 1284 GGCCTCACTATGGCGGATGACCTCACCGAGGTGACACGGAAGGTGTTGAATAATTCAGAT 1225 Query 6400 GGTCAAGG-GCTCGATGATTATTCATCAGTTTGTTTGGCTAACCATATTGACTACGAGAA 6458 || ||||| || | ||||||||| | |||| | |||||||| || |||||||| || Sbjct 1224 GGGCAAGGATGTCCA-GATTATTCAAGAATTTGCATTGCTAACCACATAGACTACGAAAA 1166 Query 6459 GTGGAATAACCATCAAAGAAAGGAATCTAATGGTCCCATCTTCAGAGTCATGGGACAGTT 6518 ||||| ||||||||| | || ||||| || | ||||| ||| ||||| ||||| Sbjct 1165 ATGGAACAACCATCAACGGAAAGAATCCAACCAACATGTCTTCCAAGTGATGGGCCAGTT 1106 Query 6519 TCTGGGTTATCCATCACTCATAGAGAGAACTCATGAATTTTTTGAGAAAAGCTTAATTTA 6578 | || || ||| || || || |||||||| || ||||| || || | | || Sbjct 1105 CCAAGGATACCCAAATCTAATCACCAGGACTCATGACTTCTTTGAAAAGAGTCTGGTGTA 1046 Query 6579 TTACAATGGGCGTCCTGATCTAATGACCGTTCGAAATGGCACATTGTGTAATTCCACTAA 6638 ||| ||| || || ||||| | ||| |||| || | |||| || ||| Sbjct 1045 TTATGTTGGAATACCAGACTTAATGCTCCAACGAGATGGGAC----TTTAAT--CAATAA 992 Query 6639 G------CACCGGGTTTGTTGGAATGGGCAAAAAGGAGGTTTGGAAGGACTAAGACAAAA 6692 | ||| || || ||||| || ||| ||||| | ||||||| || || |||| Sbjct 991 GGAAAGACACGTTGTCTGCTGGAACGGCCAATCAGGAGATCTGGAAGGCCTCAGGTAAAA 932 Query 6693 GGGATGGAGTATTGTGAAT 6711 ||| |||||| || | ||| Sbjct 931 GGGCTGGAGTGTTCTTAAT 913 >seq22788 Length=2006 Score = 131 bits (144), Expect = 1e-26 Identities = 228/332 (69%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 6142 GCAACAAACTGGAAAGCCTTTCTGAAAGATATCGACGAAAATGGAATGGATGATGACGAT 6201 || || || ||||| | || || |||| ||| | || || || | || || | | Sbjct 1870 GCTACGAATTGGAAGGAGTTCCTTCAAGACATCAATGACAACGGCTTAGACGAAAATTAC 1811 Query 6202 TTGATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTCTTCTCA 6261 ||| | || ||| ||| || |||||| ||||| |||| | || |||| ||| | Sbjct 1810 TTGGTTATCGGACTAAGAGGGAAAGAACGAGAAATGAAGAGGATCGGAAGATATTTCGCC 1751 Query 6262 TTGATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACATAC 6321 || |||||||||| | | | || || ||||||||||| ||||| | ||||| | || Sbjct 1750 TTAATGTCATGGAAACTCCGTGAGTACTTTGTGATCACAGAGTATCTGATCAAGAAGTAT 1691 Query 6322 TACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAG 6381 || ||||| || || |||||| |||| ||||| || || || || |||||| || ||| Sbjct 1690 TATGTTCCGTTATTCAAGGGGCTAACAATGGCTGACGATCTAACCGAGGTGATGAAAAAG 1631 Query 6382 ATGATGGACAGTTCATCAGGTCAAGGGCTCGATGATTATTCATCAGTTTGTTTGGCTAAC 6441 |||||| || |||| |||||||| | || || | ||| || | || ||| Sbjct 1630 ATGATGAACCATTCAGATGGTCAAGGATGTGCAGACTACACCAGAGTCTGCATAGCGAAC 1571 Query 6442 CATATTGACTACGAGAAGTGGAATAACCATCA 6473 ||||| || ||| |||||||| ||||| || Sbjct 1570 CATATAGATTACACCAAGTGGAACAACCACCA 1539 >seq53828 Length=2951 Score = 127 bits (140), Expect = 1e-25 Identities = 318/479 (66%), Gaps = 32/479 (7%) Strand=Plus/Minus Query 6645 GGTTTGTTGGAATGGGCAAAAAGGAGGTTTGGAAGGACTAAGACAAAAGGGATGGAGTAT 6704 |||||| |||||||| || || ||||| |||||||| | |||||||| || |||||||| Sbjct 2561 GGTTTGCTGGAATGGACAGAAGGGAGGACTGGAAGGATTCAGACAAAAAGGGTGGAGTAT 2502 Query 6705 TGTGAATCTCTTGGTTATTCAAAGGGAAG----CCAAAATTCGAAACACAGCAGTGAAGG 6760 ||| ||| ||| |||| ||| | || | ||| || ||||| ||| || | Sbjct 2501 TGTAAATTACTT-AATATTAGAAGAGTAGTCCTCGAAAGTT---AACACGAAAGTTAATG 2446 Query 6761 TCTTAGCACAGGGAGATAATCAGGTTATATGCACTCAATACAA--GACA--AAGAAAACC 6816 | || || ||||| |||||||| || || ||||| || ||||| | || |||| |||| Sbjct 2445 TTTTGGCTCAGGGGGATAATCAAGTCATCTGCACCCATTACAAAGGTCAGCAAGATAACC 2386 Query 6817 AGATCAGA---ATTGGA-----ATTAAGAGCAGTCTTACATCAGATGGCAGGAAACAATA 6868 | |||| ||| | ||||||| | || ||| |||| || | Sbjct 2385 AAGACAGACACCTTGCAGAAAGATTAAGA----------AACATTTGG--AGAAATAACA 2338 Query 6869 ATAAAATCATGGAAGAAATTAAGAGAGGGACAGAGAAGTTGGGCCTAATCATAAATGATG 6928 | | | |||||| | || | || || | || | || | || ||||| || ||||| | Sbjct 2337 ACCTATTAATGGAAAATATCAGGATAGCGGCAAATAAAATAGGACTAATAATCAATGAAG 2278 Query 6929 ATGAGACTATGCAATCAGCAGACTATTTAAATTACGGGAAAATTCCAATTTTCCGGGGAG 6988 |||| ||| | ||||| || | ||||||||| || ||| | | |||| ||| Sbjct 2277 ATGAAACTCTCCAATCTGCCACATTTTTAAATTATGGAAAAGTATTATTTTTATTAGGAA 2218 Query 6989 TCATAAGAGGACTAGAAACAAAGAGATGGTCACGGGTAACATGTGTCACTAATGATCAGA 7048 | ||| | |||||||| || |||| || || |||||||| || ||||||||| Sbjct 2217 ACTTAATTGCTCTAGAAACTAAATAATGGAGCCGTGTCACATGTGTGACGAATGATCAGG 2158 Query 7049 TCCCGACATGTGCCAATTTGATGTCCTCAGTCTCCACCAATGCTTTGACTGTTGCTCAT 7107 | ||||| | | ||| | |||| ||||| || || | ||||||| || ||| Sbjct 2157 TGCCGACCTTAGGTAATATTTTGTCGGCAGTCGTGACAAACTCCCTGACTGTAGCACAT 2099 >seq36779 Length=13892 Score = 102 bits (112), Expect = 6e-18 Identities = 262/398 (66%), Gaps = 36/398 (9%) Strand=Plus/Plus Query 6208 ATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTCTTCTCATTGATG 6267 |||||| | | ||| ||||| || || |||||| ||| || | || || || | ||| Sbjct 5391 ATTGGACTCAGGGGGAAAGAGAGGGAGATGAAAAGAGCGGGTCGGTTTTTAGCACTTATG 5450 Query 6268 TCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACATACTACGTT 6327 || ||| || | ||||| || ||||| || || || | ||||| ||| || Sbjct 5451 TCCTGGGAGTTGCGAGAATACTTCGTGATTACAGAATATCTTATCAAGGAGCACTTTGTC 5510 Query 6328 CCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAGATGATG 6387 || || |||||||| | |||||||| |||||| | | ||| |||| Sbjct 5511 CCATTATTTAAGGGTCTGACTATGGCCGATGAC----------TCAATAACTCC--GATG 5558 Query 6388 GACAGTTCATCAGGTCAAGGGCTCGATGATTATTCATCAGTTTGTTTGGCTAACCATATT 6447 |||| | || || | || ||| | | | ||| | || || ||||| Sbjct 5559 GACA------------AGGGTGTCCA-GACTATACTAAAATCTGTGTAGCGAATCATATC 5605 Query 6448 GACTACGAGAAGTGGAATAACCATCAAAGAAAGGAATCTAATGGTCCCATCTTCAGAGTC 6507 ||||| || || ||||| |||||| | || ||| ||| | ||| | ||| Sbjct 5606 GACTATGAAAAATGGAACAACCATAACTCCAATCAAT---ATG------TATTCCGTGTC 5656 Query 6508 ATGGGACAGTTTCTGGGTTATCCATCA-CTCATAGAGAGAACTCATGAATTTTTTGAGAA 6566 ||||| |||||| ||||||| || ||| || || || | || |||||||| |||||||| Sbjct 5657 ATGGGCCAGTTTTTGGGTTACCC-TCATCTAATTGAACGGACCCATGAATTCTTTGAGAA 5715 Query 6567 AAGCTTAATTTATTACAATGGGCGTCCTGATCTAATGA 6604 ||| |||||||||||| || ||||| ||||| |||| Sbjct 5716 AAGTTTAATTTATTACGTCGGTCGTCCCGATCTGATGA 5753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35363204118688